Benchmarking foundation models for splice site and exon annotation (abstract)

Cross-Attention Transformer for Prostate Cancer Grading with LLM-Guided Histopathology Descriptions (abstract)

NeuroGAN-3D: Enhancing Intrinsic Functional Brain Networks via High-Fidelity 3D Generative Super-Resolution (abstract)

Methods for Spatial Analysis of Immune Cell Interaction in Breast Cancer (abstract)

Noise reduction methods for single cell RNA and VDJ sequencing data (abstract)

Diversity and Distinctive Characteristics of the Global RNA Virome in Urban & Peri-urban Environments (abstract)

Inferring mutational order via a novel dependency graph-based approach (abstract)

AmpliconHunter2: a SIMD-Accelerated In-Silico PCR Engine (abstract)

All Edges Lead to Nodes: Can Multiple Methods Lead to the Same Hi-C Contact Maps? (abstract)

Branch lengths inference and its application in beta diversity computation (abstract)

Foundation Models for Gut Microbiome Representation Learning (abstract)

Computational Inference of CRC Cancer Gene Mutation Order (abstract)

Manifold learning reveals cell cycle plasticity underlying fractional resistance to palbociclib in ER+/HER2− breast tumor cells (abstract)

A Comprehensive Benchmark of Discrepancies Across Microbial Genome Reference Databases (abstract)

Compactly Representing a set of Tumor Phylogenies (abstract)

Cell-to-Cell Communication Analysis in Skin Cancer Using Cell Chat (abstract)

Predicting clonal progression in cancers with blood-based genomics (abstract)

Identification of ADAR editing signatures across bacterial, viral, and fungal infections (abstract)

Embedding-based methodology for Balanced Minimum Evolution phylogenetic inference (abstract)

Benchmarking Deep Generative Models for Antibody Design and Optimization: A Systematic Evaluation (abstract)

Uncovering Hierarchical Structure in LLM Embeddings with $\delta$-Hyperbolicity, Ultrametricity, and Neighbor Joining (abstract)

Enhancement of the Genetic Algorithm using Saltation (abstract)

Structured Modeling of Allelic-specific Gene Expression (abstract)

A classification pipeline for B-ALL genomic subtypes using Nanopore mRNA-sequencing (abstract)

Integrating Sparse Sequence, Experimental, and AI-Predicted Structural Information for Genome-Scale Protein–Nucleic Acid Interaction Prediction (abstract)

Computational Genomics for Polyploid Organisms: Distinguishing paradigms for post-polyploid evolution (abstract)

Using gene-specific ADAR editing profiles as blood-based biomarkers for neuropsychiatric disorders (abstract)

Comparing Hamming distance vs LLM Embedding distance metrics in Evolutionary Space (abstract)

Interpreting Infectious Disease Surveillance During Armed Conflict: War-Driven Epidemiological Divergence (abstract)

Trustworthy Multimodal LLMs for Medical Diagnostics via Confidence Calibration (abstract)

Machine Learning Approaches for Radiotherapy in Head and Neck Cancer (abstract)

Exploring the Causal Relationship between the Gut Microbiome and Polycystic Ovarian Syndrome (abstract)

“You Can’t Deny Who You Are”: Cross-Sectional Dimensionality Reduction Reveals Strongest Connection Between Identity and Lower GI Microbial Composition (abstract)

LLM-GeneTxGraph: A LLM-based Knowledge Graph Generation Framework for Gene-gene Network and Downstream Tasks (abstract)

POSTER TALK: LV-Vis: A Memory-Efficient Large Volume Visualization System Using a Multilevel Octree (abstract)

POSTER TALK: Computerized Tomography Localized Starburst Artifact Reduction using View Angle Shift Bayesian Optimization (abstract)

POSTER TALK: Vibration Correction For High-Resolution Synchrotron Computerized Tomography Using SIREN and Gradient Descent (abstract)

POSTER TALK: From Activity to Potency: An Integrated Machine Learning Framework for HIV-1 Integrase Inhibitor Discovery (abstract)

XMorph: Explainable Brain Tumor Analysis Via LLM-Assisted Hybrid Deep Intelligence (abstract)

Using Cluster Quality Metrics for Record Linkage Evaluation (abstract)

Leveraging Vision Transformers and Traditional Classifiers for Accurate Gastrointestinal Disease Detection (abstract)

Selene: Faster Detection of Microsatellite Instability in Cancer Transcriptomics Using k-mer Filtering (abstract)

ImmuneBoost: A Gradient Boosting Machine Learning Model for Neoepitopes Classification (abstract)

Critical Evaluation of Long Read Taxonomic Profiling of the Gut Microbiome (abstract)

Whole Metagenome Sequencing: not Deep Enough for Complete Microbial Function Recovery (abstract)

Efficient Metagenomic Analysis via Quantization​ (abstract)

Reconstruction of Cancer Evolutionary History From Single Cell Data (abstract)

Pushing the Limits of Long-Read, Low-Biomass Metagenomics (abstract)

HexSplit: An Improved Computational Approach for Detecting Partial Gene Transfer (abstract)

On campus dormitories as viral transmission sinks: Phylodynamic insights into student housing networks during the COVID-19 pandemic (abstract)

DANCE: Deep Learning-Assisted Analysis of ProteiN Sequences Using Chaos Enhanced Kaleidoscopic Images (abstract)

AtlasCollect: A Single Cell Data Atlas Tool and Unified Platform for Datasets Collection and Integration (abstract)

Reconstructing intra-tumor fitness landscapes from scSeq CNA profiles via simulation-based Bayesian inference and Deep Learning (abstract)