Program for Monday, February 16th: Talk View

PROGRAM FOR MONDAY, FEBRUARY 16TH: TALK VIEW

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View: with abstracts session overview

9:00

9:30

10:00

10:30

11:00

11:30

12:00

12:30

13:00

13:30

14:00

14:30

15:00

15:30

16:00

16:30

17:00

09:00-09:20

Enhancement of the Genetic Algorithm using Saltation

Hafsa Farooq, Mark Grinshpon, Ryan Alomair, Alex Zelikovsky

09:20-09:40

Structured Modeling of Allelic-specific Gene Expression

William Majoros

09:40-10:00

A classification pipeline for B-ALL genomic subtypes using Nanopore mRNA-sequencing

John Lin, Thomas Alexander, Jeremy Wang

10:00-10:20

Integrating Sparse Sequence, Experimental, and AI-Predicted Structural Information for Genome-Scale Protein–Nucleic Acid Interaction

Xingcheng Lin

10:20-10:40

Computational Genomics for Polyploid Organisms: Distinguishing paradigms for post-polyploid

Gavin Conant

09:00-09:20

Using gene-specific ADAR editing profiles as blood-based biomarkers for neuropsychiatric disorders

Ayesha Tariq, Helen Piontkivska

09:20-09:40

Comparing Hamming distance vs LLM Embedding distance metrics in Evolutionary Space

Ezekiel Adeniyi, Alex Zelikovskiy, Pavel Skums

09:40-10:00

Interpreting Infectious Disease Surveillance During Armed Conflict: War-Driven Epidemiological

Alexander Kirpich

10:00-10:20

Trustworthy Multimodal LLMs for Medical Diagnostics via Confidence Calibration

Avais Jan

10:20-10:40

Machine Learning Approaches for Radiotherapy in Head and Neck Cancer

Somiya Rauf, Hafsa Farooq, Prakash Chourasia

11:00-11:20

Exploring the Causal Relationship between the Gut Microbiome and Polycystic Ovarian Syndrome

S. Menendez, V. Stebliankin, G. Narasimhan, T. Cickovski, K. Mathee

11:20-11:40

“You Can’t Deny Who You Are”: Cross-Sectional Dimensionality Reduction Reveals Strongest Connection Between Identity and Lower GI Microbial

Zackary Schreiner, Trevor Cickovski, Kalai Mathee

11:40-12:00

LLM-GeneTxGraph: A LLM-based Knowledge Graph Generation Framework for Gene-gene Network and Downstream

Bingjun Li, Mason Ritchotte, Sihong He, Sheida Nabavi

12:00-12:10

POSTER TALK: LV-Vis: A Memory-Efficient Large Volume Visualization System Using a Multilevel Octree

Yi-Chun Chang, I-Chieh Hsu, Chang-Chieh Cheng, Yu-Tai Ching

12:10-12:20

POSTER TALK: Computerized Tomography Localized Starburst Artifact Reduction using View Angle Shift Bayesian

Yi-Chun Chang, Chang-Chieh Cheng, Yu-Tai Ching

12:20-12:30

POSTER TALK: Vibration Correction For High-Resolution Synchrotron Computerized Tomography Using SIREN and Gradient

Yi-Chun Chang, Chang-Chieh Cheng, Yu-Tai Ching

12:30-12:40

POSTER TALK: From Activity to Potency: An Integrated Machine Learning Framework for HIV-1 Integrase Inhibitor

Arash Maghsoudlou, Zahra Hajimahdi, Afshin Zarghi

11:00-11:20

XMorph: Explainable Brain Tumor Analysis Via LLM-Assisted Hybrid Deep Intelligence

S. Salem Ghahfarokhi, M. Esfahani, R. Sunderraman, V. Calhoun, M. Alser

11:20-11:40

Using Cluster Quality Metrics for Record Linkage Evaluation

Basak, Shah, Mathur, Hutnick, Park, Weinberg, Sahni, Rajasekaran

11:40-12:00

Leveraging Vision Transformers and Traditional Classifiers for Accurate Gastrointestinal Disease

Bikash Kumar Paul, Sajib Acharjee Dip, Ram Prosad Sarker, Liqing Zhang

12:00-12:20

Selene: Faster Detection of Microsatellite Instability in Cancer Transcriptomics Using k-mer

Emma Clift, Jaime Davila

12:20-12:40

ImmuneBoost: A Gradient Boosting Machine Learning Model for Neoepitopes Classification

Romi Barde, Mohammad Tariqul Islam, Sahar Al Seesi

14:00-15:10 Keynote-IV: Benjamin Callahan: More Signal from Microbiome Data by Modeling Measurement Error

15:30-15:50

Critical Evaluation of Long Read Taxonomic Profiling of the Gut Microbiome

Huang et.al

15:50-16:10

Whole Metagenome Sequencing: not Deep Enough for Complete Microbial Function Recovery

Liu et.al

16:10-16:30

Efficient Metagenomic Analysis via Quantization

Nayeem Uddin Mohammed, Kamil Akhtar, Ritesh Yadav, Mohammed Alser

16:30-16:50

Reconstruction of Cancer Evolutionary History From Single Cell Data

Ryan Alomair, Alina Nemira, Pavel Skums, Alexander Zelikovsky

16:50-17:10

Pushing the Limits of Long-Read, Low-Biomass Metagenomics

Qing Dai, Claudia Gunsch, Joshua Granek

15:30-15:50

HexSplit: An Improved Computational Approach for Detecting Partial Gene Transfer

Shreya Seshadri, Sumaira Zaman, Mukul S. Bansal

15:50-16:10

On campus dormitories as viral transmission sinks: Phylodynamic insights into student housing networks during the COVID-19

Juan Bolanos, Cynthia Gibas, Alex Donrburg

16:10-16:30

DANCE: Deep Learning-Assisted Analysis of ProteiN Sequences Using Chaos Enhanced Kaleidoscopic

Taslim Murad, Prakash Chourasia, Sarwan Ali, Murray Patterson

16:30-16:50

AtlasCollect: A Single Cell Data Atlas Tool and Unified Platform for Datasets Collection and

S. Boddeda, O. Oladapo, Y. Ali, N. Louque, S. Kapoor, M. Moussa

16:50-17:10

Reconstructing intra-tumor fitness landscapes from scSeq CNA profiles via simulation-based Bayesian inference and Deep

Maryam Kafi Kang, Pavel Skums

17:10-17:20 Conference Closing

10:40-11:00 Coffee Break

12:40-14:00 Lunch Break (lunch provided)

15:10-15:30 Coffee Break