Talk Keyword Index

TALK KEYWORD INDEX

This page contains an index consisting of author-provided keywords.

Shortcuts: A B C D E F G H I K L M N O P Q R S T U V W X

A
Acutance	POSTER TALK: Computerized Tomography Localized Starburst Artifact Reduction using View Angle Shift Bayesian Optimization
ADAR	Using gene-specific ADAR editing profiles as blood-based biomarkers for neuropsychiatric disorders Identification of ADAR editing signatures across bacterial, viral, and fungal infections
Adenosine deaminases acting on RNA	Identification of ADAR editing signatures across bacterial, viral, and fungal infections
Allelic imbalance	Structured Modeling of Allelic-specific Gene Expression
Alternative splicing	Benchmarking foundation models for splice site and exon annotation
amplicon sequencing	AmpliconHunter2: a SIMD-Accelerated In-Silico PCR Engine
Ancestral State Reconstruction	On campus dormitories as viral transmission sinks: Phylodynamic insights into student housing networks during the COVID-19 pandemic
antibody binding affinity optimization	Benchmarking Deep Generative Models for Antibody Design and Optimization: A Systematic Evaluation
Antibody design	Benchmarking Deep Generative Models for Antibody Design and Optimization: A Systematic Evaluation
Armed Conflict	Interpreting Infectious Disease Surveillance During Armed Conflict: War-Driven Epidemiological Divergence
Artificial Intelligence	POSTER TALK: From Activity to Potency: An Integrated Machine Learning Framework for HIV-1 Integrase Inhibitor Discovery
Atlas	AtlasCollect: A Single Cell Data Atlas Tool and Unified Platform for Datasets Collection and Integration
AVX2	AmpliconHunter2: a SIMD-Accelerated In-Silico PCR Engine
B
b-cell acute lymphoblastic leukemia	A classification pipeline for B-ALL genomic subtypes using Nanopore mRNA-sequencing
Balanced Minimum Evolution	Embedding-based methodology for Balanced Minimum Evolution phylogenetic inference
batch effects	Foundation Models for Gut Microbiome Representation Learning
Bayesian networks	Exploring the Causal Relationship between the Gut Microbiome and Polycystic Ovarian Syndrome
Bayesian Optimization	POSTER TALK: Computerized Tomography Localized Starburst Artifact Reduction using View Angle Shift Bayesian Optimization
Benchmarking	Benchmarking foundation models for splice site and exon annotation
Bioinformatics	Identification of ADAR editing signatures across bacterial, viral, and fungal infections
Biomedical Knowledge Discovery	LLM-GeneTxGraph: A LLM-based Knowledge Graph Generation Framework for Gene-gene Network and Downstream Tasks
Bootstrap resampling	Computational Inference of CRC Cancer Gene Mutation Order
Brain Tumor	XMorph: Explainable Brain Tumor Analysis Via LLM-Assisted Hybrid Deep Intelligence
branch lengths imputation	Branch lengths inference and its application in beta diversity computation
breast cancer	Manifold learning reveals cell cycle plasticity underlying fractional resistance to palbociclib in ER+/HER2− breast tumor cells
C
cancer	Predicting clonal progression in cancers with blood-based genomics
cancer genomics	ImmuneBoost: A Gradient Boosting Machine Learning Model for Neoepitopes Classification Inferring mutational order via a novel dependency graph-based approach Computational Inference of CRC Cancer Gene Mutation Order
CDK4/6 inhibitor	Manifold learning reveals cell cycle plasticity underlying fractional resistance to palbociclib in ER+/HER2− breast tumor cells
cell cycle	Manifold learning reveals cell cycle plasticity underlying fractional resistance to palbociclib in ER+/HER2− breast tumor cells
Chaos Game Representation	DANCE: Deep Learning-Assisted Analysis of ProteiN Sequences Using Chaos Enhanced Kaleidoscopic Images
Chaotic Features	XMorph: Explainable Brain Tumor Analysis Via LLM-Assisted Hybrid Deep Intelligence
Cheminformatics	POSTER TALK: From Activity to Potency: An Integrated Machine Learning Framework for HIV-1 Integrase Inhibitor Discovery
classification	A classification pipeline for B-ALL genomic subtypes using Nanopore mRNA-sequencing
Clique-SNV	Enhancement of the Genetic Algorithm using Saltation
clonal evolution	Predicting clonal progression in cancers with blood-based genomics
Cluster quality indices	Using Cluster Quality Metrics for Record Linkage Evaluation
Clustering evaluation	Using Cluster Quality Metrics for Record Linkage Evaluation
Computatiotional	Efficient Metagenomic Analysis via Quantization
Computed tomography (CT)	Machine Learning Approaches for Radiotherapy in Head and Neck Cancer
Computer-aided diagnosis	Leveraging Vision Transformers and Traditional Classifiers for Accurate Gastrointestinal Disease Detection
Confidence calibration	Trustworthy Multimodal LLMs for Medical Diagnostics via Confidence Calibration
Copy Number Variation	Reconstruction of Cancer Evolutionary History From Single Cell Data
Crohn’s Disease (CD)	“You Can’t Deny Who You Are”: Cross-Sectional Dimensionality Reduction Reveals Strongest Connection Between Identity and Lower GI Microbial Composition
Cross-Attention Transformer	Cross-Attention Transformer for Prostate Cancer Grading with LLM-Guided Histopathology Descriptions
D
Data quality validation	Using Cluster Quality Metrics for Record Linkage Evaluation
Data Structures	Compactly Representing a set of Tumor Phylogenies
de-noising	Noise reduction methods for single cell RNA and VDJ sequencing data
deep learning	ImmuneBoost: A Gradient Boosting Machine Learning Model for Neoepitopes Classification XMorph: Explainable Brain Tumor Analysis Via LLM-Assisted Hybrid Deep Intelligence Reconstructing intra-tumor fitness landscapes from scSeq CNA profiles via simulation-based Bayesian inference and Deep Learning Benchmarking Deep Generative Models for Antibody Design and Optimization: A Systematic Evaluation
Deep learning models	Benchmarking foundation models for splice site and exon annotation
diffusion models	Benchmarking Deep Generative Models for Antibody Design and Optimization: A Systematic Evaluation
dimension reduction	Manifold learning reveals cell cycle plasticity underlying fractional resistance to palbociclib in ER+/HER2− breast tumor cells
Dimensionality Reduction	“You Can’t Deny Who You Are”: Cross-Sectional Dimensionality Reduction Reveals Strongest Connection Between Identity and Lower GI Microbial Composition
directed acyclic graph (DAG)	Inferring mutational order via a novel dependency graph-based approach
Directed Acyclic Graphs	Compactly Representing a set of Tumor Phylogenies Computational Inference of CRC Cancer Gene Mutation Order
dissimilarity metrics	Branch lengths inference and its application in beta diversity computation
Distance metrics	Using Cluster Quality Metrics for Record Linkage Evaluation
Diversity	Diversity and Distinctive Characteristics of the Global RNA Virome in Urban & Peri-urban Environments
DNA contacts	All Edges Lead to Nodes: Can Multiple Methods Lead to the Same Hi-C Contact Maps?
Dosimetric data	Machine Learning Approaches for Radiotherapy in Head and Neck Cancer
Drug Discovery	POSTER TALK: From Activity to Potency: An Integrated Machine Learning Framework for HIV-1 Integrase Inhibitor Discovery
Duplication Event	Reconstruction of Cancer Evolutionary History From Single Cell Data
E
Embedding	Comparing Hamming distance vs LLM Embedding distance metrics in Evolutionary Space Embedding-based methodology for Balanced Minimum Evolution phylogenetic inference
Embedding Analysis	Uncovering Hierarchical Structure in LLM Embeddings with $\delta$-Hyperbolicity, Ultrametricity, and Neighbor Joining
Entity resolution	Using Cluster Quality Metrics for Record Linkage Evaluation
Epidemiological Divergence	Interpreting Infectious Disease Surveillance During Armed Conflict: War-Driven Epidemiological Divergence
Epidemiology	On campus dormitories as viral transmission sinks: Phylodynamic insights into student housing networks during the COVID-19 pandemic
Epistasis	Enhancement of the Genetic Algorithm using Saltation
Evolution	Comparing Hamming distance vs LLM Embedding distance metrics in Evolutionary Space
Evolutionary History	Reconstruction of Cancer Evolutionary History From Single Cell Data
evolutionary model	Computational Genomics for Polyploid Organisms: Distinguishing paradigms for post-polyploid evolution
Exon segmentation	Benchmarking foundation models for splice site and exon annotation
F
Fitness	Reconstructing intra-tumor fitness landscapes from scSeq CNA profiles via simulation-based Bayesian inference and Deep Learning
flow matching	Benchmarking Deep Generative Models for Antibody Design and Optimization: A Systematic Evaluation
fMRI	NeuroGAN-3D: Enhancing Intrinsic Functional Brain Networks via High-Fidelity 3D Generative Super-Resolution
Foundation models	Benchmarking foundation models for splice site and exon annotation Foundation Models for Gut Microbiome Representation Learning
G
GAN	NeuroGAN-3D: Enhancing Intrinsic Functional Brain Networks via High-Fidelity 3D Generative Super-Resolution
Gastrointestinal Disease	Leveraging Vision Transformers and Traditional Classifiers for Accurate Gastrointestinal Disease Detection
Gene Tree Reconstruction	HexSplit: An Improved Computational Approach for Detecting Partial Gene Transfer
generative models	Benchmarking Deep Generative Models for Antibody Design and Optimization: A Systematic Evaluation
Gene–gene Networks	LLM-GeneTxGraph: A LLM-based Knowledge Graph Generation Framework for Gene-gene Network and Downstream Tasks
genome evolution	Computational Genomics for Polyploid Organisms: Distinguishing paradigms for post-polyploid evolution
Genome-scale binding prediction	Integrating Sparse Sequence, Experimental, and AI-Predicted Structural Information for Genome-Scale Protein–Nucleic Acid Interaction Prediction
genomic subtypes	A classification pipeline for B-ALL genomic subtypes using Nanopore mRNA-sequencing
genomics	Predicting clonal progression in cancers with blood-based genomics
Geometric Group Theory	Uncovering Hierarchical Structure in LLM Embeddings with $\delta$-Hyperbolicity, Ultrametricity, and Neighbor Joining
gradient boosting	ImmuneBoost: A Gradient Boosting Machine Learning Model for Neoepitopes Classification
Gradient Descent	POSTER TALK: Vibration Correction For High-Resolution Synchrotron Computerized Tomography Using SIREN and Gradient Descent
Graph Learning	LLM-GeneTxGraph: A LLM-based Knowledge Graph Generation Framework for Gene-gene Network and Downstream Tasks
graph neural networks	Benchmarking Deep Generative Models for Antibody Design and Optimization: A Systematic Evaluation
Graph-based modeling	Computational Inference of CRC Cancer Gene Mutation Order
gut microbiome	Exploring the Causal Relationship between the Gut Microbiome and Polycystic Ovarian Syndrome Foundation Models for Gut Microbiome Representation Learning
H
Hamming	Comparing Hamming distance vs LLM Embedding distance metrics in Evolutionary Space
Head and neck cancer	Machine Learning Approaches for Radiotherapy in Head and Neck Cancer
Highfidelity	NeuroGAN-3D: Enhancing Intrinsic Functional Brain Networks via High-Fidelity 3D Generative Super-Resolution
Histopathology	Cross-Attention Transformer for Prostate Cancer Grading with LLM-Guided Histopathology Descriptions
HIV Integrase Inhibitors	POSTER TALK: From Activity to Potency: An Integrated Machine Learning Framework for HIV-1 Integrase Inhibitor Discovery
I
Implicit Neural Representations	POSTER TALK: Vibration Correction For High-Resolution Synchrotron Computerized Tomography Using SIREN and Gradient Descent
in silico PCR	AmpliconHunter2: a SIMD-Accelerated In-Silico PCR Engine
Inference	Embedding-based methodology for Balanced Minimum Evolution phylogenetic inference
integration	AtlasCollect: A Single Cell Data Atlas Tool and Unified Platform for Datasets Collection and Integration
Internal and terminal exons	Benchmarking foundation models for splice site and exon annotation
Irritable Bowel Disease (IBD)	“You Can’t Deny Who You Are”: Cross-Sectional Dimensionality Reduction Reveals Strongest Connection Between Identity and Lower GI Microbial Composition
IUPAC matching	AmpliconHunter2: a SIMD-Accelerated In-Silico PCR Engine
K
k-mers	Selene: Faster Detection of Microsatellite Instability in Cancer Transcriptomics Using k-mer Filtering
Knowledge-based response-adapted radiotherapy	Machine Learning Approaches for Radiotherapy in Head and Neck Cancer
L
Large Language Models	Cross-Attention Transformer for Prostate Cancer Grading with LLM-Guided Histopathology Descriptions LLM-GeneTxGraph: A LLM-based Knowledge Graph Generation Framework for Gene-gene Network and Downstream Tasks
Ligand	Cell-to-Cell Communication Analysis in Skin Cancer Using Cell Chat
LLM	Comparing Hamming distance vs LLM Embedding distance metrics in Evolutionary Space
LLMs	XMorph: Explainable Brain Tumor Analysis Via LLM-Assisted Hybrid Deep Intelligence Uncovering Hierarchical Structure in LLM Embeddings with $\delta$-Hyperbolicity, Ultrametricity, and Neighbor Joining
Localized Starburst Artifact	POSTER TALK: Computerized Tomography Localized Starburst Artifact Reduction using View Angle Shift Bayesian Optimization
Long Read Sequencing	Critical Evaluation of Long Read Taxonomic Profiling of the Gut Microbiome
long-read	A classification pipeline for B-ALL genomic subtypes using Nanopore mRNA-sequencing
long-read sequencing	Pushing the Limits of Long-Read, Low-Biomass Metagenomics
low-biomass metagenomics	Pushing the Limits of Long-Read, Low-Biomass Metagenomics
Lower GastroIntestinal (GI) Tract	“You Can’t Deny Who You Are”: Cross-Sectional Dimensionality Reduction Reveals Strongest Connection Between Identity and Lower GI Microbial Composition
M
machine learning	ImmuneBoost: A Gradient Boosting Machine Learning Model for Neoepitopes Classification POSTER TALK: From Activity to Potency: An Integrated Machine Learning Framework for HIV-1 Integrase Inhibitor Discovery Manifold learning reveals cell cycle plasticity underlying fractional resistance to palbociclib in ER+/HER2− breast tumor cells Benchmarking Deep Generative Models for Antibody Design and Optimization: A Systematic Evaluation Predicting clonal progression in cancers with blood-based genomics
manifold learning	Manifold learning reveals cell cycle plasticity underlying fractional resistance to palbociclib in ER+/HER2− breast tumor cells
Massively Parallel Reporter Assay	Structured Modeling of Allelic-specific Gene Expression
Maximum Intensity Projection	POSTER TALK: LV-Vis: A Memory-Efficient Large Volume Visualization System Using a Multilevel Octree
Medical artificial intelligence	Leveraging Vision Transformers and Traditional Classifiers for Accurate Gastrointestinal Disease Detection
Medical image Classification	Leveraging Vision Transformers and Traditional Classifiers for Accurate Gastrointestinal Disease Detection
Memory Optimization	POSTER TALK: LV-Vis: A Memory-Efficient Large Volume Visualization System Using a Multilevel Octree
Metagenomics	Foundation Models for Gut Microbiome Representation Learning Critical Evaluation of Long Read Taxonomic Profiling of the Gut Microbiome Efficient Metagenomic Analysis via Quantization A Comprehensive Benchmark of Discrepancies Across Microbial Genome Reference Databases Diversity and Distinctive Characteristics of the Global RNA Virome in Urban & Peri-urban Environments
Metric Space Analysis	Uncovering Hierarchical Structure in LLM Embeddings with $\delta$-Hyperbolicity, Ultrametricity, and Neighbor Joining
Microbial Evolution	HexSplit: An Improved Computational Approach for Detecting Partial Gene Transfer
microbial function	Whole Metagenome Sequencing: not Deep Enough for Complete Microbial Function Recovery
microbial reference databases	A Comprehensive Benchmark of Discrepancies Across Microbial Genome Reference Databases
microbiome	Critical Evaluation of Long Read Taxonomic Profiling of the Gut Microbiome All Edges Lead to Nodes: Can Multiple Methods Lead to the Same Hi-C Contact Maps?
microbiome of the built environment	Pushing the Limits of Long-Read, Low-Biomass Metagenomics
Microsatellite instability	Selene: Faster Detection of Microsatellite Instability in Cancer Transcriptomics Using k-mer Filtering
molecular diagnostics	A classification pipeline for B-ALL genomic subtypes using Nanopore mRNA-sequencing
Molecular Sequence Analysis	DANCE: Deep Learning-Assisted Analysis of ProteiN Sequences Using Chaos Enhanced Kaleidoscopic Images
Mononucleotide repeats	Selene: Faster Detection of Microsatellite Instability in Cancer Transcriptomics Using k-mer Filtering
MPRA	Structured Modeling of Allelic-specific Gene Expression
multi-omics	Exploring the Causal Relationship between the Gut Microbiome and Polycystic Ovarian Syndrome
Multi-Volume Alignment	POSTER TALK: LV-Vis: A Memory-Efficient Large Volume Visualization System Using a Multilevel Octree
Multimodal data fusion	Machine Learning Approaches for Radiotherapy in Head and Neck Cancer
Multimodal LLMs	Trustworthy Multimodal LLMs for Medical Diagnostics via Confidence Calibration
Mutation order inference	Computational Inference of CRC Cancer Gene Mutation Order
N
nanopore	A classification pipeline for B-ALL genomic subtypes using Nanopore mRNA-sequencing
neoepitope classification	ImmuneBoost: A Gradient Boosting Machine Learning Model for Neoepitopes Classification
network (RNN)	Inferring mutational order via a novel dependency graph-based approach
Neuropsychiatric disorders	Using gene-specific ADAR editing profiles as blood-based biomarkers for neuropsychiatric disorders
O
Object Oriented Data Analysis	Methods for Spatial Analysis of Immune Cell Interaction in Breast Cancer
Octree Level of Detail	POSTER TALK: LV-Vis: A Memory-Efficient Large Volume Visualization System Using a Multilevel Octree
Optimization	Enhancement of the Genetic Algorithm using Saltation
Out of Core Visualization	POSTER TALK: LV-Vis: A Memory-Efficient Large Volume Visualization System Using a Multilevel Octree
oxford nanopore technologies	A classification pipeline for B-ALL genomic subtypes using Nanopore mRNA-sequencing
P
Parkinson's disease	Using gene-specific ADAR editing profiles as blood-based biomarkers for neuropsychiatric disorders
Partial Gene Transfer Detection	HexSplit: An Improved Computational Approach for Detecting Partial Gene Transfer
Pathogen-specific signatures	Identification of ADAR editing signatures across bacterial, viral, and fungal infections
personalized cancer immunotherapy	ImmuneBoost: A Gradient Boosting Machine Learning Model for Neoepitopes Classification
Phylogenetics	On campus dormitories as viral transmission sinks: Phylodynamic insights into student housing networks during the COVID-19 pandemic HexSplit: An Improved Computational Approach for Detecting Partial Gene Transfer
Phylogeography	On campus dormitories as viral transmission sinks: Phylodynamic insights into student housing networks during the COVID-19 pandemic
Physics-informed data-driven modeling	Integrating Sparse Sequence, Experimental, and AI-Predicted Structural Information for Genome-Scale Protein–Nucleic Acid Interaction Prediction
Polycystic Ovarian Syndrome (PCOS)	Exploring the Causal Relationship between the Gut Microbiome and Polycystic Ovarian Syndrome
polyploidy	Computational Genomics for Polyploid Organisms: Distinguishing paradigms for post-polyploid evolution
Prognostic markers	Using gene-specific ADAR editing profiles as blood-based biomarkers for neuropsychiatric disorders
Prostate Cancer Grading	Cross-Attention Transformer for Prostate Cancer Grading with LLM-Guided Histopathology Descriptions
Protein-nucleic acid interactions	Integrating Sparse Sequence, Experimental, and AI-Predicted Structural Information for Genome-Scale Protein–Nucleic Acid Interaction Prediction
proteomics	Manifold learning reveals cell cycle plasticity underlying fractional resistance to palbociclib in ER+/HER2− breast tumor cells
Punctuated Equilibrium	Enhancement of the Genetic Algorithm using Saltation
Q
Quantization	Efficient Metagenomic Analysis via Quantization
R
Radiotherapy dose prediction	Machine Learning Approaches for Radiotherapy in Head and Neck Cancer
read depth	Whole Metagenome Sequencing: not Deep Enough for Complete Microbial Function Recovery
Receptor	Cell-to-Cell Communication Analysis in Skin Cancer Using Cell Chat
Record linkage	Using Cluster Quality Metrics for Record Linkage Evaluation
recurrent neural	Inferring mutational order via a novel dependency graph-based approach
Repreentation Learning	Uncovering Hierarchical Structure in LLM Embeddings with $\delta$-Hyperbolicity, Ultrametricity, and Neighbor Joining
representation learning	Foundation Models for Gut Microbiome Representation Learning
RNA Editing	Using gene-specific ADAR editing profiles as blood-based biomarkers for neuropsychiatric disorders
RNA-editing	Identification of ADAR editing signatures across bacterial, viral, and fungal infections
RNA-Seq	A classification pipeline for B-ALL genomic subtypes using Nanopore mRNA-sequencing Structured Modeling of Allelic-specific Gene Expression
RNA-sequencing	Selene: Faster Detection of Microsatellite Instability in Cancer Transcriptomics Using k-mer Filtering
Rotational Axis Misalignment	POSTER TALK: Computerized Tomography Localized Starburst Artifact Reduction using View Angle Shift Bayesian Optimization
RRDB	NeuroGAN-3D: Enhancing Intrinsic Functional Brain Networks via High-Fidelity 3D Generative Super-Resolution
S
scRNA-Seq	Noise reduction methods for single cell RNA and VDJ sequencing data
scVDJ-Seq	Noise reduction methods for single cell RNA and VDJ sequencing data
sequence modeling	Inferring mutational order via a novel dependency graph-based approach
sequencing methods	All Edges Lead to Nodes: Can Multiple Methods Lead to the Same Hi-C Contact Maps?
Signaling Pathways	Cell-to-Cell Communication Analysis in Skin Cancer Using Cell Chat
SIMD	AmpliconHunter2: a SIMD-Accelerated In-Silico PCR Engine
similarity metric	Branch lengths inference and its application in beta diversity computation
Similarity-based clustering	Using Cluster Quality Metrics for Record Linkage Evaluation
simulation	Predicting clonal progression in cancers with blood-based genomics
single cell	AtlasCollect: A Single Cell Data Atlas Tool and Unified Platform for Datasets Collection and Integration
Single cell sequencing	Reconstructing intra-tumor fitness landscapes from scSeq CNA profiles via simulation-based Bayesian inference and Deep Learning
Single-Cell	Reconstruction of Cancer Evolutionary History From Single Cell Data
Single-cell RNA	Cell-to-Cell Communication Analysis in Skin Cancer Using Cell Chat
Skin Cancer	Cell-to-Cell Communication Analysis in Skin Cancer Using Cell Chat
somatic mutation	Inferring mutational order via a novel dependency graph-based approach
Spatial Statistics	Methods for Spatial Analysis of Immune Cell Interaction in Breast Cancer
spatialmaps	NeuroGAN-3D: Enhancing Intrinsic Functional Brain Networks via High-Fidelity 3D Generative Super-Resolution
Splice site prediction	Benchmarking foundation models for splice site and exon annotation
STARR-seq	Structured Modeling of Allelic-specific Gene Expression
structure-sequence integration	Integrating Sparse Sequence, Experimental, and AI-Predicted Structural Information for Genome-Scale Protein–Nucleic Acid Interaction Prediction
SuperResolution	NeuroGAN-3D: Enhancing Intrinsic Functional Brain Networks via High-Fidelity 3D Generative Super-Resolution
Supervised Analysis	DANCE: Deep Learning-Assisted Analysis of ProteiN Sequences Using Chaos Enhanced Kaleidoscopic Images
Surveillance	Interpreting Infectious Disease Surveillance During Armed Conflict: War-Driven Epidemiological Divergence
Synchrotron Tomography	POSTER TALK: Vibration Correction For High-Resolution Synchrotron Computerized Tomography Using SIREN and Gradient Descent
T
T cell receptors	DANCE: Deep Learning-Assisted Analysis of ProteiN Sequences Using Chaos Enhanced Kaleidoscopic Images
taxonomic discrepancies	A Comprehensive Benchmark of Discrepancies Across Microbial Genome Reference Databases
Taxonomic Profiling	Critical Evaluation of Long Read Taxonomic Profiling of the Gut Microbiome
Tomography	POSTER TALK: Computerized Tomography Localized Starburst Artifact Reduction using View Angle Shift Bayesian Optimization
transformers	Foundation Models for Gut Microbiome Representation Learning
Transposable element–derived exons	Benchmarking foundation models for splice site and exon annotation
Traveling Salesman Problem	Enhancement of the Genetic Algorithm using Saltation
Tree construction	Branch lengths inference and its application in beta diversity computation
tree inference	Branch lengths inference and its application in beta diversity computation
tree metric	Branch lengths inference and its application in beta diversity computation
Tumor Infitrating Lymphocytes	Methods for Spatial Analysis of Immune Cell Interaction in Breast Cancer
Tumor Phylogenetics	Compactly Representing a set of Tumor Phylogenies
U
Ulcerative Colitis (UC)	“You Can’t Deny Who You Are”: Cross-Sectional Dimensionality Reduction Reveals Strongest Connection Between Identity and Lower GI Microbial Composition
UniFrac	Branch lengths inference and its application in beta diversity computation
Unsupervised learning	Using Cluster Quality Metrics for Record Linkage Evaluation Manifold learning reveals cell cycle plasticity underlying fractional resistance to palbociclib in ER+/HER2− breast tumor cells
V
Vibration Artifact	POSTER TALK: Vibration Correction For High-Resolution Synchrotron Computerized Tomography Using SIREN and Gradient Descent
View-angle Deviation	POSTER TALK: Computerized Tomography Localized Starburst Artifact Reduction using View Angle Shift Bayesian Optimization
Virome	Diversity and Distinctive Characteristics of the Global RNA Virome in Urban & Peri-urban Environments
Vision-language models	Trustworthy Multimodal LLMs for Medical Diagnostics via Confidence Calibration
Vision–Language Alignment	Cross-Attention Transformer for Prostate Cancer Grading with LLM-Guided Histopathology Descriptions
W
whole metagenome shotgun sequencing	Whole Metagenome Sequencing: not Deep Enough for Complete Microbial Function Recovery
whole transcriptome	A classification pipeline for B-ALL genomic subtypes using Nanopore mRNA-sequencing
X
XAI	XMorph: Explainable Brain Tumor Analysis Via LLM-Assisted Hybrid Deep Intelligence