VPH2018: VIRTUAL PHYSIOLOGICAL HUMAN 2018
PROGRAM FOR FRIDAY, SEPTEMBER 7TH
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09:00-10:00 Session 14: Plenary speaker III
09:00
Cell Shape Information: Retrieval and Physiological Consequences

ABSTRACT. The shape of a cell is an indicator of the health of the cell and tissues within the cells exist. For over a century the medical discipline of pathology has successfully used cell shape and tissue organization to diagnose disease states. My colleagues and I have been studying how the information in cell shape is decoded and have found that multiple mechanisms exist for information retrieval. Using analytical approaches and numerical simulations we studied how cell shape affects biochemical signaling across the plasma membrane. Mathematical analyses reveal transient accumulation of activated receptors that arise from local imbalance between reaction and diffusion of soluble ligands and receptors in the plane of the membrane. Numerical simulations show that transient microdomains of activated receptors amplify signals to downstream protein kinases. The model predictions have been experimentally validated for growth factor and G protein coupled receptors. In addition to modulating information flow through receptors for extracellular biochemical ligands, information from cell shape can be retrieved independently. Theoretical analyses, based on reaction/diffusion balance that is dependent on surface-to-volume relationships and optimal control theory, indicate that information from cell shape can be resolved from mechanical signals. β3-integrin signaling pathway communicates cell shape information in kidney podocytes and vascular smooth muscle cells. Differential proteomics and functional ablation assays indicate that β3-integrin uses the ezrin-radixin-moesin (ERM) family to transduce shape signals. We find that 3-D cell shape information regulates phenotype as defined by expression of proteins required for physiological function and their location to appropriate subcellular regions. Recent studies in vascular smooth muscle cells show that cell shape regulates organelle location, inter-organelle distances and differential distribution of receptors in the plasma membrane. Combination of these factors leads to the modulation of signals transduced by the M3 muscarinic receptor/Gq/ Phospholipase C-β pathway at the plasma membrane, amplifying Ca2+ dynamics in the cytoplasm and the nucleus as determined by increased activity of myosin light chain kinase in the cytoplasm and enhanced nuclear localization of the transcription factor NFAT. Thus acute physiological responses can be coupled to longer term transcriptional programs. Overall these observations provide insights into how cell shape can control physiological functions at the tissue level.

10:00-10:30Coffee Break
10:30-12:30 Session 15A: Signalling networks
10:30
Mathematical modelling of cancer signalling dynamics, drug responses and prognosis
11:00
Differential HMGB1 Network Connectivity may underlie the Protective Effect of N-acetylcysteine in the Context of Acetaminophen Toxicity in Pediatric Acute Liver Failure
SPEAKER: Ruben Zamora
11:15
Understanding the interactions between Wnt and BMP signalling pathways in human Periosteum Derived Cells
11:30
Reverse Engineering Methods to Study Osteochondral Regulatory Networks – a tool to identify potential drug targets
SPEAKER: Liesbet Geris
11:45
Modeling Multistep Molecular Communication Events in the Axonal Neuron Microtubule Network in Amyloid Beta Neurodegeneration
SPEAKER: Janet L Paluh
10:30-12:30 Session 15B: Image-based in-vivo analysis
Location: Room 0.01
10:30
Tissues, Information and Computers: Image-driven modelling of limb development
11:00
Validation of a reconstruction method of femoral artery models from computed tomography and application to in vivo cases
11:15
Validation of a 3D in-stent restenosis model using μCT and histology data
SPEAKER: Pavel Zun
11:30
Image Segmentation and Mesh Generation for Biomedical Applications
11:45
Parametric Anatomical Models for Cardiovascular Device Evaluation
12:00
Experimental validation of finite element analysis of a composite clavicle using digital image correlation
12:15
An in silico model of human liver regeneration to predict critical factors controlling the recovery phenotype
10:30-12:30 Session 15C: Multiphysics modeling II
Chairs:
Location: Room 0.03
10:30
Elucidating the importance of drug dissolution and specific-binding in a 2D model of arterial drug-eluting stents
10:45
Multiphysics approach of confined cell migration
11:00
A Mathematical Model of Cerebral Vasospasm and Comparison between Treatment Strategies
11:15
Structured fractal tree model for flow simulation in coronary vascular tree
11:30
Predicting cardiac toxicity of drugs using the Living Heart Model
11:45
A fluid-electro-mechanical model of the human heart for supercomputers
12:00
Multiphysics modelling of damage-induced response in arterial tissues: a chemo-mechano-biological computational framework for in-stent restenosis
SPEAKER: Meike Gierig
12:15
In Silico Investigation of Thrombosis Initiation in Left Ventricular Assist Device
SPEAKER: Georgy Guria
10:30-12:30 Session 15D: Mechanical cues in health and disease mechanisms organized by European Society of Biomechanics (ESB)
Location: Room 0.02
10:30
Biomechanical Analysis of the Pedicle Screws and Cement Injection Influence in the Sacral Region Stiffness - A Finite Element Analysis
10:45
A computational investigation of the link between wall shear stress after stent deployment in coronary arteries and neo-intimal coverage.
11:00
Simulating cartilage endplate early degradation to understand intervertebral disc degeneration
11:15
Combined in-vitro/in-silico model of biodegradation
SPEAKER: Simone Russo
11:30
Estimation of Diabetic Retinal Micronaneurysm Perfusion Parameters Based on Computational Fluid Dynamics Analysis
11:45
Impact of the TAR technique for ventral hernia repairs on the abdominal wall biomechanics: a numerical study.
12:00
Investigating mechanisms of response to AV fistula for the treatment of hypertension using a mathematical model of physiology
SPEAKER: John Clemmer
12:15
In vitro and in silico characterization of computational prediction of cement infiltration in osteoporotic bones: an in vitro and in silico biomechanical study
10:30-12:30 Session 15E: Industry Session
Location: Room 0.04
10:30
Modeling Approach to Determine Optimal Prediabetic Diet
SPEAKER: Samuel Burns
10:50
A Mock Submission to Initiate a Clinical Trial in the U.S.
SPEAKER: Tina Morrison
11:10
Applying body-composition models in drug discovery
11:30
New Opportunities for Computational Biomechanics In the Industry
12:30-14:00Lunch Break