Author:Amarda Shehu

Publications
Exploring Deep Neural Network Architectures: A Case Study on Improving Antimicrobial Peptide Recognition Manpriya Dua, Daniel Barbara and Amarda Shehu In:Proceedings of the 12th International Conference on Bioinformatics and Computational Biology
From Unsupervised Multi-Instance Learning to Identification of Near-Native Protein Structures Fardina Alam and Amarda Shehu In:Proceedings of the 12th International Conference on Bioinformatics and Computational Biology
Equipping Decoy Generation Algorithms for Template-free Protein Structure Prediction with Maps of the Protein Conformation Space Ahmed Bin Zaman and Amarda Shehu In:Proceedings of 11th International Conference on Bioinformatics and Computational Biology
Connecting Molecular Energy Landscape Analysis with Markov Model-based Analysis of Equilibrium Structural Dynamics Kazi Lutful Kabir, Nasrin Akhter and Amarda Shehu In:Proceedings of 11th International Conference on Bioinformatics and Computational Biology

Keyphrases

antimicrobial peptide recognition, Convolution Layer, Decoy generation, decoy quality, deep learning, energy landscape, evolutionary algorithm, Markov state models, molecular structural dynamics, multi-instance learning, protein structure prediction, protein tertiary structure, recurrent layer, template-free protein structure prediction, unsupervised learning.