ISMCO'20: 2ND INTERNATIONAL SYMPOSIUM ON MATHEMATICAL AND COMPUTATIONAL ONCOLOGY

This page contains an index consisting of author-provided keywords.

A
amplicon	Leveraging Hi-C and Whole Genome Shotgun Sequencing for Double Minute Chromosome Discovery
Approximate Bayesian Computation	tugHall: A Tool to Reproduce Darwinian Evolution of Cancer Cells for Simulation-Based Personalized Medicine
artificial intelligence	Deep learning prediction of BRAF-RAS gene expression signature identifies noninvasive follicular thyroid neoplasms with papillary-like nuclear features Financial and clinical impact of artificial intelligence for colorectal cancer genotyping
B
BCL2	Novel driver synonymous mutations in the coding regions of GCB lymphoma patients improve the transcription levels of BCL2
binding affinity prediction	Scoring class I peptide-HLA complexes
Biomarkers of Gastric Cancer	The potential of single cell RNA-sequencing data for the prediction of gastric cancer serum biomarkers
BRAF V600E	Deep learning prediction of BRAF-RAS gene expression signature identifies noninvasive follicular thyroid neoplasms with papillary-like nuclear features
BRAF-RAS score	Deep learning prediction of BRAF-RAS gene expression signature identifies noninvasive follicular thyroid neoplasms with papillary-like nuclear features
Breast Cancer	CHIMERA: Combining Mechanistic Models and Machine Learning for Personalized Chemotherapy and Surgery Sequencing in Breast Cancer
C
cancer	Fighting drug resistance with math Quantitative molecular dissection of cancer evolution To function or not to function Deep Learning for Clinically Actionable Cancer Pathology Feature Detection Enriching cancer research through unconventional collaborations
cancer cell evolution	tugHall: A Tool to Reproduce Darwinian Evolution of Cancer Cells for Simulation-Based Personalized Medicine
Cancer cell populations	Plasticity in cancer cell populations: biology, mathematics and philosophy of cancer?
Cancer evolution	Detecting subclones from spatially resolved RNA-seq data
Cancer genomes	Novel driver synonymous mutations in the coding regions of GCB lymphoma patients improve the transcription levels of BCL2
cancer hallmarks	tugHall: A Tool to Reproduce Darwinian Evolution of Cancer Cells for Simulation-Based Personalized Medicine
Cancer Immune Escape	A Mathematical Model of Cancer Immune Escape
cancer immunotherapy	Scoring class I peptide-HLA complexes Virtual screening of peptide-targets for cancer immunotherapy using HLA-Arena
Cancer Initiation	Mathematical modeling of clonal evolution in hematopoietic tissue
Cancer systems biology	Modulating tumor composition in a cell-cell interaction model of SCLC
cancer treatments	Quantitative molecular dissection of cancer evolution
Chemotherapy Sequencing	CHIMERA: Combining Mechanistic Models and Machine Learning for Personalized Chemotherapy and Surgery Sequencing in Breast Cancer
clinical trial design	Better immunotherapy trials with higher power using mechanistic microsimulations
Clonal Hematopoiesis	Mathematical modeling of clonal evolution in hematopoietic tissue
CMA-ES	Model of hematopoiesis dynamics under IFN alpha therapy in Myeloproliferative Neoplasms
Coding regions	Novel driver synonymous mutations in the coding regions of GCB lymphoma patients improve the transcription levels of BCL2
collaboration	Enriching cancer research through unconventional collaborations
Colorectal cancer	Financial and clinical impact of artificial intelligence for colorectal cancer genotyping
Complex dynamics	Modulating tumor composition in a cell-cell interaction model of SCLC
complex structural variation	Leveraging Hi-C and Whole Genome Shotgun Sequencing for Double Minute Chromosome Discovery
Computational Bayesian Statistics	Model of hematopoiesis dynamics under IFN alpha therapy in Myeloproliferative Neoplasms
Computational models	Novel driver synonymous mutations in the coding regions of GCB lymphoma patients improve the transcription levels of BCL2
computer simulations	Better immunotherapy trials with higher power using mechanistic microsimulations
computer-aided diagnosis	Discriminative Localized Sparse Representations for Breast Cancer Screening
crowdsourcing	Enriching cancer research through unconventional collaborations
D
Deep Learning	Fine-Tuning Deep Learning Architectures for Early Detection of Oral Cancer Ex-vivo slide-free microscopy with H&E color-mapping via unpaired image-to-image translation.
Diagnostics	Financial and clinical impact of artificial intelligence for colorectal cancer genotyping
dictionary learning	Discriminative Localized Sparse Representations for Breast Cancer Screening
digital pathology	Deep learning prediction of BRAF-RAS gene expression signature identifies noninvasive follicular thyroid neoplasms with papillary-like nuclear features
double minute chromosome	Leveraging Hi-C and Whole Genome Shotgun Sequencing for Double Minute Chromosome Discovery
drug	Deep Learning for Clinically Actionable Cancer Pathology Feature Detection
drug response	To function or not to function
drug-resistance	Fighting drug resistance with math
Dynamic Systems	Model of hematopoiesis dynamics under IFN alpha therapy in Myeloproliferative Neoplasms
E
eccDNA	Leveraging Hi-C and Whole Genome Shotgun Sequencing for Double Minute Chromosome Discovery
evolutionary biology	Plasticity in cancer cell populations: biology, mathematics and philosophy of cancer?
evolutionary dynamics	Characterizing and forecasting tumour evolution
evolutionary forecasting	Characterizing and forecasting tumour evolution
G
Gastric Cancer	The potential of single cell RNA-sequencing data for the prediction of gastric cancer serum biomarkers
Gastric Cancer Secretome	The potential of single cell RNA-sequencing data for the prediction of gastric cancer serum biomarkers
GCB lymphoma	Novel driver synonymous mutations in the coding regions of GCB lymphoma patients improve the transcription levels of BCL2
gene	To function or not to function Deep Learning for Clinically Actionable Cancer Pathology Feature Detection
Gene expression	Novel driver synonymous mutations in the coding regions of GCB lymphoma patients improve the transcription levels of BCL2
H
Hematopoiesis	Model of hematopoiesis dynamics under IFN alpha therapy in Myeloproliferative Neoplasms
I
IFN alpha therapy	Model of hematopoiesis dynamics under IFN alpha therapy in Myeloproliferative Neoplasms
Immune Checkpoint Inhibitor	A Mathematical Model of Cancer Immune Escape
Immunotherapy	Better immunotherapy trials with higher power using mechanistic microsimulations Financial and clinical impact of artificial intelligence for colorectal cancer genotyping
M
Machine Learning	Deep learning prediction of BRAF-RAS gene expression signature identifies noninvasive follicular thyroid neoplasms with papillary-like nuclear features Activation vs. Organization: Prognostic Implications of T and B cell Features of the PDAC Microenvironment CHIMERA: Combining Mechanistic Models and Machine Learning for Personalized Chemotherapy and Surgery Sequencing in Breast Cancer
Mathematical Modeling	A Mathematical Model of Cancer Immune Escape
mathematical models	Fighting drug resistance with math
Mathematical Oncology	CHIMERA: Combining Mechanistic Models and Machine Learning for Personalized Chemotherapy and Surgery Sequencing in Breast Cancer
modeling	Enriching cancer research through unconventional collaborations
molecular dissection	Quantitative molecular dissection of cancer evolution
molecular docking	Scoring class I peptide-HLA complexes
Moran Model	Mathematical modeling of clonal evolution in hematopoietic tissue
multi-region sequencing	Characterizing and forecasting tumour evolution
multiplexed imaging	Activation vs. Organization: Prognostic Implications of T and B cell Features of the PDAC Microenvironment
Myeloproliferative Neoplasms	Model of hematopoiesis dynamics under IFN alpha therapy in Myeloproliferative Neoplasms
N
Neural networks	On the use of neural networks with censored time-to-event data
Next Generation Sequence Data Sets	Theoretical Foundation of the Performance of Phylogeny-Based Somatic Variant Detection
next generation sequencing	Leveraging Hi-C and Whole Genome Shotgun Sequencing for Double Minute Chromosome Discovery
NIFTP	Deep learning prediction of BRAF-RAS gene expression signature identifies noninvasive follicular thyroid neoplasms with papillary-like nuclear features
O
ODE modeling	Better immunotherapy trials with higher power using mechanistic microsimulations
Oral Cancer	Fine-Tuning Deep Learning Architectures for Early Detection of Oral Cancer
Oral Potentially Malignant Disorders	Fine-Tuning Deep Learning Architectures for Early Detection of Oral Cancer
P
pancreatic cancer	Activation vs. Organization: Prognostic Implications of T and B cell Features of the PDAC Microenvironment
pathology	Ex-vivo slide-free microscopy with H&E color-mapping via unpaired image-to-image translation.
peptide-HLA modeling	Virtual screening of peptide-targets for cancer immunotherapy using HLA-Arena
Personalized Medicine	CHIMERA: Combining Mechanistic Models and Machine Learning for Personalized Chemotherapy and Surgery Sequencing in Breast Cancer
Plasticity	Plasticity in cancer cell populations: biology, mathematics and philosophy of cancer?
Population dynamics modeling	Modulating tumor composition in a cell-cell interaction model of SCLC
Predictions	Novel driver synonymous mutations in the coding regions of GCB lymphoma patients improve the transcription levels of BCL2
prognostic biomarkers	Characterizing and forecasting tumour evolution
Pseudo-observations	On the use of neural networks with censored time-to-event data
PTC	Deep learning prediction of BRAF-RAS gene expression signature identifies noninvasive follicular thyroid neoplasms with papillary-like nuclear features
R
RAS	Deep learning prediction of BRAF-RAS gene expression signature identifies noninvasive follicular thyroid neoplasms with papillary-like nuclear features
S
Silent mutation	Novel driver synonymous mutations in the coding regions of GCB lymphoma patients improve the transcription levels of BCL2
slide-free microscopy	Ex-vivo slide-free microscopy with H&E color-mapping via unpaired image-to-image translation.
Small cell lung cancer	Modulating tumor composition in a cell-cell interaction model of SCLC
Somatic Variant Detection	Theoretical Foundation of the Performance of Phylogeny-Based Somatic Variant Detection
sparse representation	Discriminative Localized Sparse Representations for Breast Cancer Screening
Spatial statistics	Detecting subclones from spatially resolved RNA-seq data
Spatial transcriptomics	Detecting subclones from spatially resolved RNA-seq data
spatio-temporal model	Characterizing and forecasting tumour evolution
structural variation	Leveraging Hi-C and Whole Genome Shotgun Sequencing for Double Minute Chromosome Discovery
Survival data	On the use of neural networks with censored time-to-event data
T
tumor imaging	Ex-vivo slide-free microscopy with H&E color-mapping via unpaired image-to-image translation.
Tumor Phylogeny	Theoretical Foundation of the Performance of Phylogeny-Based Somatic Variant Detection
tumor-immune dynamics	Better immunotherapy trials with higher power using mechanistic microsimulations
V
virtual screening	Virtual screening of peptide-targets for cancer immunotherapy using HLA-Arena

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