ICCABS 2023: 2023 12TH INTERNATIONAL CONFERENCE ON COMPUTATIONAL ADVANCES IN BIO AND MEDICAL SCIENCES

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Abushukair, Hassan	Association of baseline tumor-specific neoantigens and CD8+ T infiltration with immune-related adverse events secondary to immune checkpoint inhibitors
Adams, Jacob	Single-cell RNA-sequencing analysis of breast tumor infiltrating lymphocytes treated with localized ablative cancer immunotherapy
Adekoya, Aanuoluwa	Investigating Microbial Community Functions in Chronic Bacterial Infections Investigating Microbial Community Functions in Chronic Bacterial Infections
Al-Shomrani, Badr	Mitogenome Assembly from Ultraconserved Elements Sequencing Reads
Alachkar, Houda	A Rigorous Benchmarking of alignment-based HLA callers for RNA-seq data A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data
Ali, Sarwan	Hashed Embeddings: A Promising Technique for Efficient Protein Sequence Representation Preserving Hidden Hierarchical Structures: Poincaré Distance for Enhanced Genomic Sequence Analysis Gaussian Beltrami-Klein Model for Protein Sequence Classification: A Hyperbolic Approach
Ali, Yasir	Gaussian Beltrami-Klein Model for Protein Sequence Classification: A Hyperbolic Approach
Alomair, Ryan	A Rigorous Benchmarking of alignment-based HLA callers for RNA-seq data A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data
Alqahtani, Fahad	Mitogenome Assembly from Ultraconserved Elements Sequencing Reads
Ayyala, Ram	A Rigorous Benchmarking of alignment-based HLA callers for RNA-seq data A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data
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Bansal, Mukul S.	Towards improved reconstruction of single-cell copy number phylogenies
Barzas, Konstantinos	An Explainable Deep Learning Framework for Mandibular Canal Segmentation from Cone Beam Computed Tomography volume
Basiri, Mohammad Amin	Multilayer Network Analysis of Brain Signals for Detecting Alzheimer’s Disease
Bennett, Rachel	Fast Multi-level Neural Networks to Overcome Bias in Healthcare Applications
Boddeda, Sriram	Computational tumor progression analysis via seriation based trajectory inference
Boldirev, Grigore	Assessing Microbial Genome Representation Across Various Reference Databases: A Comprehensive Evaluation
Bonizzoni, Paola	Identification of Chimeric RNAs: a novel machine learning perspective
Bumin, Aysegul	PartialFibers: An efficient method for predicting Drug-Drug Interactions
Bunimovich, Leonid	Antigenic cooperation and cross-immunoreactivity networks
Burge, Kathryn	Network-Based Bioinformatics Highlights Broad Importance of Human Milk Hyaluronan
Burghard, Alice	How to Record a Phantom Sound - Tinnitus Assessment via Electrophysiology
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Cao, Guohua	Optimizing Deep Learning for Biomedical Imaging A 3D Deep Learning Architecture for Denoising Low-Dose CT Scans
Chaaban, Hala	Network-Based Bioinformatics Highlights Broad Importance of Human Milk Hyaluronan
Chaisson, Mark	VISTA: An integrated framework for structural variant discovery VISTA: An integrated framework for structural variant discovery
Chaturvedi, Ayush	Optimizing Deep Learning for Biomedical Imaging
Chen, Hsin-Hao	A Model for Elucidating the Single Molecule Synthesis Process through Temporal Information
Chen, Jie	Computational and modeling aspects of analyzing high-throughput genomic data
Chen, Siqi	SpaNN: a flexible deep neural network framework for predicting the transcript distribution of the spatial transcriptomics
Chen, Sixia	Machine Learning Application for Predicting Smoking Cessation Among US Adults: An Analysis of Waves 1-5 of the PATH Study
Chen, Wei	Single-cell RNA-sequencing analysis of breast tumor infiltrating lymphocytes treated with localized ablative cancer immunotherapy Single-cell RNA sequencing reveals the atlas of a breast tumor microenvironment and the remodeling by photo-immunotherapy
Chen, Yuzhou	GenoDiffusion: Conditional Denoising Diffusion Model for Genomic Data Augmentation
Cheng, Chu-Yu	Exploring a Solution Curve in the Phase Plane for Extreme Firing Rates in the Izhikevich Model
Chittampalli, Likhitha	A Rigorous Benchmarking of alignment-based HLA callers for RNA-seq data A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data
Chourasia, Prakash	Preserving Hidden Hierarchical Structures: Poincaré Distance for Enhanced Genomic Sequence Analysis Gaussian Beltrami-Klein Model for Protein Sequence Classification: A Hyperbolic Approach
Ciccolella, Simone	Plastic: An easy to use and modular tool for designing tumor phylogeny reconstruction pipelines
Cordes, Julia	Cancer and Tissue Prediction Using Mutational Signatures in Highly Mutated Cancers
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Das, Arghya Kusum	ParMEC: A Set of Algorithms for Parallel Metagenomic Error Correction
Davila, Jaime	Cancer and Tissue Prediction Using Mutational Signatures in Highly Mutated Cancers
De Felice, Clelia	Identification of Chimeric RNAs: a novel machine learning perspective
Della Vedova, Gianluca	Plastic: An easy to use and modular tool for designing tumor phylogeny reconstruction pipelines
Diermeier, Sarah	Single cell RNA phylogenetics of cancer
Drabcinski, Nicolae	A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater
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Eskin, Eleazar	VISTA: An integrated framework for structural variant discovery VISTA: An integrated framework for structural variant discovery
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Fagg, Andrew	Integrating Neural Networks into DNA Sequence-Based Predictions of RSS Functionality and Activity Level
Farooq, Hafsa	Genetic Algorithm with Evolutionary Jumps
Farooq, Hafsa	A Rigorous Benchmarking of alignment-based HLA callers for RNA-seq data A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data
Feng, Wu-Chun	Optimizing Deep Learning for Biomedical Imaging A 3D Deep Learning Architecture for Denoising Low-Dose CT Scans
Ford, Michael K.B	Genotyping complex immune loci using integer linear programming
Fouad, Shereen	An Explainable Deep Learning Framework for Mandibular Canal Segmentation from Cone Beam Computed Tomography volume
Freeman, Willard	Epigenetic regulation of endogenous viral elements in the aging brain
Friedman, Jacob	Unraveling the Early-Life Origins of Nonalcoholic Fatty Liver Disease (NAFLD) Using Multi-'Omics Approaches
Furrer, Coline	Single-cell RNA-sequencing analysis of breast tumor infiltrating lymphocytes treated with localized ablative cancer immunotherapy
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Ganguly, Arnab	On the Hardness of Wildcard Pattern Matching on de Bruijn Graphs
Gao, Hongchang	FedDP: Secure Federated Learning with Differential Privacy for Disease Prediction
Gavryushkin, Alex	Single cell RNA phylogenetics of cancer
Gavryushkina, Alexandra "Sasha"	Single cell RNA phylogenetics of cancer
Germain, Pierre-Luc	Benchmarking computational methods for single-cell chromatin data analysis
Gibney, Daniel	On the Hardness of Wildcard Pattern Matching on de Bruijn Graphs
Gordeev, Victor	A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater
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Hari, Ananth	Genotyping complex immune loci using integer linear programming
Harris, Justin	Integrating Neural Networks into DNA Sequence-Based Predictions of RSS Functionality and Activity Level
Hoolehan, Walker	Epigenetic regulation of endogenous viral elements in the aging brain
Hooshmand, Sahar	PHViT4Lung: Parallel Hybrid Vision Transformers Augmented by Transfer Learning to Enhance Lung Cancer Diagnosis
Hoover, Ashley	Single-cell RNA-sequencing analysis of breast tumor infiltrating lymphocytes treated with localized ablative cancer immunotherapy
Hu, Jieting	A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data
Hu, Jieting	A Rigorous Benchmarking of alignment-based HLA callers for RNA-seq data
Huang, Kejun	PartialFibers: An efficient method for predicting Drug-Drug Interactions
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Ibberson, Carolyn	Investigating Microbial Community Functions in Chronic Bacterial Infections Investigating Microbial Community Functions in Chronic Bacterial Infections
J
Jaiswal, Pooja	A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater
Jasa, Gainer	An Explainable Deep Learning Framework for Mandibular Canal Segmentation from Cone Beam Computed Tomography volume
Jha, Sumit Kumar	Automated Formalization of Biological Model Properties into Temporal Logics using Large Language Models
Jinna, Nikita	Decoding Heterogeneity in Quadruple-Negative Breast Cancer: A Data-Driven Clustering Approach
Jonscher, Karen	Unraveling the Early-Life Origins of Nonalcoholic Fatty Liver Disease (NAFLD) Using Multi-'Omics Approaches
Joo, Jong Wha	A Rigorous Benchmarking of alignment-based HLA callers for RNA-seq data A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data
Julu, Pranay	PHViT4Lung: Parallel Hybrid Vision Transformers Augmented by Transfer Learning to Enhance Lung Cancer Diagnosis
Jung, Junghyun	A Rigorous Benchmarking of alignment-based HLA callers for RNA-seq data A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data
Juyal, Akshay	Genetic Algorithm with Evolutionary Jumps
Juyal, Akshay	Plastic: An easy to use and modular tool for designing tumor phylogeny reconstruction pipelines
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Kahveci, Tamer	PartialFibers: An efficient method for predicting Drug-Drug Interactions
Kasparian, Armen	A 3D Deep Learning Architecture for Denoising Low-Dose CT Scans
Kazempour Dehkordi, Shiva	A deep neural network to de-noise single-cell RNA sequencing data
Khan, Imdadullah	Preserving Hidden Hierarchical Structures: Poincaré Distance for Enhanced Genomic Sequence Analysis
Khanmohammadi, Sina	Genetic Predisposition to Alcoholism Significantly Alters the Functional Connectivity of the Brain Multilayer Network Analysis of Brain Signals for Detecting Alzheimer’s Disease Functional Connectivity Disruptions in Alzheimer’s Disease: A Maximum Flow Perspective
Khudyakov, Yury	Assessment of PHRED Score Characteristics in Illumina MiSeq Amplicon Sequencing
Kirpich, Alexander	Clustering-Based Multi-Characteristic Comparative Analysis of COVID-19 Epidemiology in Europe
Kit, Maryna	A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater
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L. Silva, Lucas Otavio	A Simple and Interpretable Deep Learning Model for Diagnosing Pneumonia from Chest X-Ray Images
Lakshmivarahan, Sivaramakrishnan	Role of Data Assimilation in Prediction: Potential applications to Biological and Medical Sciences
Landini, Gabriel	An Explainable Deep Learning Framework for Mandibular Canal Segmentation from Cone Beam Computed Tomography volume
Lee, Seungmo	VISTA: An integrated framework for structural variant discovery VISTA: An integrated framework for structural variant discovery
Li, Bin	FedDP: Secure Federated Learning with Differential Privacy for Disease Prediction
Li, Bingjun	Single-cell Multiomics Clustering Using Graph Embedded Contrastive Learning Improved inference of single-cell haplotype-aware copy numbers in cancer
Li, Hanxia	Machine Learning Application for Predicting Smoking Cessation Among US Adults: An Analysis of Waves 1-5 of the PATH Study
Li, Min	SpaNN: a flexible deep neural network framework for predicting the transcript distribution of the spatial transcriptomics
Liao, Li	Improving Disease Comorbidity Prediction with Biologically Supervised Graph Embedding
Lin, Guohui	mRNA stability prediction
Liu, Kaili	Single-cell RNA-sequencing analysis of breast tumor infiltrating lymphocytes treated with localized ablative cancer immunotherapy
Lopes, Fabrício Martins	A Simple and Interpretable Deep Learning Model for Diagnosing Pneumonia from Chest X-Ray Images
Lu, Chung-Chin	A Model for Elucidating the Single Molecule Synthesis Process through Temporal Information Exploring a Solution Curve in the Phase Plane for Extreme Firing Rates in the Izhikevich Model
Luo, Siyuan	Benchmarking computational methods for single-cell chromatin data analysis
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Machalinski, Adeline	Epigenetic regulation of endogenous viral elements in the aging brain
Mancuso, Nick	A Rigorous Benchmarking of alignment-based HLA callers for RNA-seq data A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data
Manee, Manee	Mitogenome Assembly from Ultraconserved Elements Sequencing Reads
Mangul, Serghei	A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater A Rigorous Benchmarking of alignment-based HLA callers for RNA-seq data VISTA: An integrated framework for structural variant discovery VISTA: An integrated framework for structural variant discovery A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data Adaptive receptor repertoire profiling methods for RNA sequencing Assessing Microbial Genome Representation Across Various Reference Databases: A Comprehensive Evaluation A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater
Mansoor, Haris	Preserving Hidden Hierarchical Structures: Poincaré Distance for Enhanced Genomic Sequence Analysis Gaussian Beltrami-Klein Model for Protein Sequence Classification: A Hyperbolic Approach
Marques Hara, Karine	A Simple and Interpretable Deep Learning Model for Diagnosing Pneumonia from Chest X-Ray Images
Mathee, Kalai	Multiomics, Causality, and Longitudinal microbiomics
Mendes de Paula, Pedro Henrique	A Simple and Interpretable Deep Learning Model for Diagnosing Pneumonia from Chest X-Ray Images
Miller, Robert	Single-cell RNA-sequencing analysis of breast tumor infiltrating lymphocytes treated with localized ablative cancer immunotherapy
Mody, Deepanshu	Exploring Protein Design Landscapes with Semi-Supervised Adaptive Sampling
Montgomery, Courtney	Growing Opportunities for Computational Advancements in Biomedical Research
Moussa, Marmar	Computational tumor progression analysis via seriation based trajectory inference Role of walnut-derived urolithins in reducing colonic inflammation in a patient cohort elucidated by an integrated omics analysis A computational framework for identifying TCell Receptor specificity in single cell resolution Computational framework for spatial omics analysis of colon polyp tissue
Munteanu, Viorel	A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater
Murad, Taslim	Hashed Embeddings: A Promising Technique for Efficient Protein Sequence Representation
Măndoiu, Ion	Mitogenome Assembly from Ultraconserved Elements Sequencing Reads
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Nabavi, Sheida	Single-cell Multiomics Clustering Using Graph Embedded Contrastive Learning Improved inference of single-cell haplotype-aware copy numbers in cancer
Naqash, Abdulrafeh	Association of baseline tumor-specific neoantigens and CD8+ T infiltration with immune-related adverse events secondary to immune checkpoint inhibitors
Narasimhan, Giri	Multiomics, Causality, and Longitudinal microbiomics
Nellore, Abhinav	A Rigorous Benchmarking of alignment-based HLA callers for RNA-seq data
Nguyen, Austin	A Rigorous Benchmarking of alignment-based HLA callers for RNA-seq data A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data
Nguyen, Sean	Multilayer Network Analysis of Brain Signals for Detecting Alzheimer’s Disease
Novikov, Daniel	Genetic Algorithm with Evolutionary Jumps
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Ovidiu, Daescu	A Unified Machine Learning Framework for Multi-subtype Tumour Classification across Diverse Datasets
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Pagolu, Sri Lakshmi Bhavani	DNA Methylation Based Subtype Classification of Breast Cancer
Pais, Namitha	Repeated Measures Latent Dirichlet Allocation for Longitudinal Microbiome Analysis
Parekh, Nita	DNA Methylation Based Subtype Classification of Breast Cancer Lightweight and Generalizable Model for COVID-19 Detection Using Chest Xray Images
Park, Sungmin	A Rigorous Benchmarking of alignment-based HLA callers for RNA-seq data A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data
Patchigulla, Hari	Improved inference of single-cell haplotype-aware copy numbers in cancer
Patel, Khooshbu	A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater
Pathak, Shashank	mRNA stability prediction
Patterson, Murray	Hashed Embeddings: A Promising Technique for Efficient Protein Sequence Representation Preserving Hidden Hierarchical Structures: Poincaré Distance for Enhanced Genomic Sequence Analysis Gaussian Beltrami-Klein Model for Protein Sequence Classification: A Hyperbolic Approach Plastic: An easy to use and modular tool for designing tumor phylogeny reconstruction pipelines
Pinkney, Holly	Single cell RNA phylogenetics of cancer
Pinnix, Zandra	Decoding Heterogeneity in Quadruple-Negative Breast Cancer: A Data-Driven Clustering Approach
Pirola, Yuri	Identification of Chimeric RNAs: a novel machine learning perspective
Pizzi, Cinzia	On Multi-Phase Metagenomics Reads Binning
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Qin, Xihan	Improving Disease Comorbidity Prediction with Biologically Supervised Graph Embedding
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Raj, Sunny	Automated Formalization of Biological Model Properties into Temporal Logics using Large Language Models
Rajasekaran, Sanguthevar	A Novel String Map-Based Approach for Distance Calculations with Applications to Faster Record Linkage Repeated Measures Latent Dirichlet Allocation for Longitudinal Microbiome Analysis
Ram Sreedharan Nair, Athulya	Antigenic cooperation and cross-immunoreactivity networks
Ravishanker, Nalini	Repeated Measures Latent Dirichlet Allocation for Longitudinal Microbiome Analysis
Razavi, Seyed Majid	Functional Connectivity Disruptions in Alzheimer’s Disease: A Maximum Flow Perspective
Razavian, Javad	A deep neural network to de-noise single-cell RNA sequencing data
Razzaghi, Talayeh	Fast Multi-level Neural Networks to Overcome Bias in Healthcare Applications
Rida, Padmashree	Decoding Heterogeneity in Quadruple-Negative Breast Cancer: A Data-Driven Clustering Approach
Rizzi, Raffaella	Identification of Chimeric RNAs: a novel machine learning perspective
Robinson, Mark	Benchmarking computational methods for single-cell chromatin data analysis
Rodgers, Karla	Integrating Neural Networks into DNA Sequence-Based Predictions of RSS Functionality and Activity Level
Roofegari Nejad, Reza	PHViT4Lung: Parallel Hybrid Vision Transformers Augmented by Transfer Learning to Enhance Lung Cancer Diagnosis
Rosenberg, Daniel	Role of walnut-derived urolithins in reducing colonic inflammation in a patient cohort elucidated by an integrated omics analysis
Rossi Paschoal, Alexandre	A Simple and Interpretable Deep Learning Model for Diagnosing Pneumonia from Chest X-Ray Images
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S, Suba	DNA Methylation Based Subtype Classification of Breast Cancer Lightweight and Generalizable Model for COVID-19 Detection Using Chest Xray Images
Sadek, Sarah	A Rigorous Benchmarking of alignment-based HLA callers for RNA-seq data A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data
Sahinalp, Cenk	Genotyping complex immune loci using integer linear programming
Sahoo, Bikram	Decoding Heterogeneity in Quadruple-Negative Breast Cancer: A Data-Driven Clustering Approach
Sajedi, Sogand	A deep neural network to de-noise single-cell RNA sequencing data
Sankararaman, Sriram	VISTA: An integrated framework for structural variant discovery VISTA: An integrated framework for structural variant discovery
Sarwal, Varuni	VISTA: An integrated framework for structural variant discovery VISTA: An integrated framework for structural variant discovery
Sathish Kumar, Vrishabhadev	A Computational Atlas for Transcriptomic Exploration of M. buryatense Using Unsupervised Machine Learning and Interactive Data Visualization
Schwartz, Russell	Incorporating structural variation into single-cell clonal lineage inference
Sharifitabar, Mohsen	A deep neural network to de-noise single-cell RNA sequencing data
Sharma, Nitesh	Assessing Microbial Genome Representation Across Various Reference Databases: A Comprehensive Evaluation
Shi, Xinghua	GenoDiffusion: Conditional Denoising Diffusion Model for Genomic Data Augmentation FedDP: Secure Federated Learning with Differential Privacy for Disease Prediction
Shin, Dong-Guk	AFA: Abstract Functional Analysis Identifies New Microglial Subtypes at Single Cell Level in Alzheimer’s Disease
Sims, Seth	Assessment of PHRED Score Characteristics in Illumina MiSeq Amplicon Sequencing
Singh, Rahul	Tracking and modeling the dynamics of evolving SARS-CoV-2 Variants
Sinha, Pranav	Automated Formalization of Biological Model Properties into Temporal Logics using Large Language Models
Skums, Pavel	Early detection of emerging viral variants with altered phenotypes using viral epistatic networks
Solhjoo, Soroosh	A deep neural network to de-noise single-cell RNA sequencing data
Soliman, Ahmed	A Novel String Map-Based Approach for Distance Calculations with Applications to Faster Record Linkage
Song, Chen	GenoDiffusion: Conditional Denoising Diffusion Model for Genomic Data Augmentation
Song, Kyle	Predicting Antibiotic Metabolites with One and Two-Steps in Silico Biotransformations to Support Identification of Unknown Chemicals in Exposome and Metabolome Studies
Stebliankin, Vitalii	Multiomics, Causality, and Longitudinal microbiomics
Stubby, Emma	Functional Connectivity Disruptions in Alzheimer’s Disease: A Maximum Flow Perspective
Su, Justin	A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater
Sun, Yuanhong	Single-cell RNA-sequencing analysis of breast tumor infiltrating lymphocytes treated with localized ablative cancer immunotherapy
Sze, Sing-Hoi	An exact matching method for 16S rRNA taxonomy classification
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Tang, Qinggong	Enhancing Biomedical Research Using Novel Optical Imaging Technologies and Deep Learning
Tao, Tienze	A Rigorous Benchmarking of alignment-based HLA callers for RNA-seq data A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data
Tayebi, Zahra	Plastic: An easy to use and modular tool for designing tumor phylogeny reconstruction pipelines
Thankachan, Sharma V.	On the Hardness of Wildcard Pattern Matching on de Bruijn Graphs
Thompson, Reid	A Rigorous Benchmarking of alignment-based HLA callers for RNA-seq data A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data
Tomasella, Francesco	On Multi-Phase Metagenomics Reads Binning
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Valero, Trisha	Single-cell RNA-sequencing analysis of breast tumor infiltrating lymphocytes treated with localized ablative cancer immunotherapy
von Meyenn, Ferdinand	Benchmarking computational methods for single-cell chromatin data analysis
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Wang, Wenkang	SpaNN: a flexible deep neural network framework for predicting the transcript distribution of the spatial transcriptomics
Weiner, Samson	Towards improved reconstruction of single-cell copy number phylogenies Improved inference of single-cell haplotype-aware copy numbers in cancer
Weinstock, George	Repeated Measures Latent Dirichlet Allocation for Longitudinal Microbiome Analysis
Wilson, Steven	Genetic Predisposition to Alcoholism Significantly Alters the Functional Connectivity of the Brain
Wu, Dee	Integrating Neural Networks into DNA Sequence-Based Predictions of RSS Functionality and Activity Level
Wu, Huanmei	GenoDiffusion: Conditional Denoising Diffusion Model for Genomic Data Augmentation
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Xu, Yidian	A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater
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Yadav, Ankur	A Unified Machine Learning Framework for Multi-subtype Tumour Classification across Diverse Datasets
Yang, Jianzhi	VISTA: An integrated framework for structural variant discovery VISTA: An integrated framework for structural variant discovery
Yu, Dottie	A Rigorous Benchmarking of alignment-based HLA callers for RNA-seq data A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data
Yu, Michael	Genetic Predisposition to Alcoholism Significantly Alters the Functional Connectivity of the Brain
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Zaccagnino, Rocco	Identification of Chimeric RNAs: a novel machine learning perspective
Zare, Habil	A deep neural network to de-noise single-cell RNA sequencing data
Zelikovsky, Alex	Genetic Algorithm with Evolutionary Jumps Decoding Heterogeneity in Quadruple-Negative Breast Cancer: A Data-Driven Clustering Approach Assessment of PHRED Score Characteristics in Illumina MiSeq Amplicon Sequencing Assessing Microbial Genome Representation Across Various Reference Databases: A Comprehensive Evaluation A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater Plastic: An easy to use and modular tool for designing tumor phylogeny reconstruction pipelines
Zhang, Chenyu	AFA: Abstract Functional Analysis Identifies New Microglial Subtypes at Single Cell Level in Alzheimer’s Disease
Zhang, Liqing	A Hybrid Approach for Antibiotic Resistance Gene Characterization: Leveraging Pre-trained Protein Language Models and Alignment-Based Scoring
Zheng, Ruiqing	SpaNN: a flexible deep neural network framework for predicting the transcript distribution of the spatial transcriptomics
Zhong, Hua	Network-Based Bioinformatics Highlights Broad Importance of Human Milk Hyaluronan
Zizza, Rosalba	Identification of Chimeric RNAs: a novel machine learning perspective
Zlenko, Oksana	A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater

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