Program for Monday, December 11th: Talk View

PROGRAM FOR MONDAY, DECEMBER 11TH: TALK VIEW

Days:

next day

all days

View: with abstracts session overview

8:00

8:30

9:00

9:30

10:00

10:30

11:00

11:30

12:00

12:30

13:00

13:30

14:00

14:30

15:00

15:30

16:00

16:30

17:00

17:30

18:00

18:30

19:00

19:30

20:00

20:30

08:00-09:00 Registrations - Coffee & Pastry

09:00-09:15 Welcome and Opening Remarks

09:15-10:15

Growing Opportunities for Computational Advancements in Biomedical Research

Courtney Montgomery

10:15-10:30 Coffee Break

10:30-10:54

Single-cell RNA-sequencing analysis of breast tumor infiltrating lymphocytes treated with localized ablative cancer

K. Liu, A. Hoover, J. Adams, T. Valero, C. Furrer, R. Miller, Y. Sun, W. Chen

10:54-11:18

Cancer and Tissue Prediction Using Mutational Signatures in Highly Mutated Cancers

Julia Cordes, Jaime Davila

11:18-11:42

Decoding Heterogeneity in Quadruple-Negative Breast Cancer: A Data-Driven Clustering Approach

Bikram Sahoo, Nikita Jinna, Padmashree Rida, Zandra Pinnix, Alex Zelikovsky

11:42-12:06

A Unified Machine Learning Framework for Multi-subtype Tumour Classification across Diverse Datasets

Ankur Yadav, Daescu Ovidiu

12:06-12:30

DNA Methylation Based Subtype Classification of Breast Cancer

Sri Lakshmi Bhavani Pagolu, Suba S, Nita Parekh

10:30-10:54

Antigenic cooperation and cross-immunoreactivity networks

Leonid Bunimovich, Athulya Ram Sreedharan Nair

10:54-11:18

Hashed Embeddings: A Promising Technique for Efficient Protein Sequence Representation

Taslim Murad, Sarwan Ali, Murray Patterson

11:18-11:42

Assessment of PHRED Score Characteristics in Illumina MiSeq Amplicon Sequencing

Seth Sims, Yury Khudyakov, Alexander Zelikovsky

11:42-12:06

Gaussian Beltrami-Klein Model for Protein Sequence Classification: A Hyperbolic Approach

Sarwan Ali, Haris Mansoor, Prakash Chourasia, Yasir Ali, Murray Patterson

12:06-12:30

Mitogenome Assembly from Ultraconserved Elements Sequencing Reads

Fahad Alqahtani, Manee Manee, Badr Al-Shomrani, Ion Măndoiu

12:30-13:30 Lunch

13:30-14:30

Unraveling the Early-Life Origins of Nonalcoholic Fatty Liver Disease (NAFLD) Using Multi-'Omics

Karen Jonscher, Jacob Friedman

14:30-14:54

SpaNN: a flexible deep neural network framework for predicting the transcript distribution of the spatial

Siqi Chen, Wenkang Wang, Ruiqing Zheng, Min Li

14:54-15:18

An Explainable Deep Learning Framework for Mandibular Canal Segmentation from Cone Beam Computed Tomography

Konstantinos Barzas, Shereen Fouad, Gainer Jasa, Gabriel Landini

15:18-15:42

FedDP: Secure Federated Learning with Differential Privacy for Disease Prediction

Bin Li, Hongchang Gao, Xinghua Shi

15:42-16:06

Optimizing Deep Learning for Biomedical Imaging

Ayush Chaturvedi, Guohua Cao, Wu-Chun Feng

16:06-16:30

Automated Formalization of Biological Model Properties into Temporal Logics using Large Language

Sumit Kumar Jha, Pranav Sinha, Sunny Raj

14:30-14:54

A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater

Su et.al

14:54-15:18

Tracking and modeling the dynamics of evolving SARS-CoV-2 Variants

Rahul Singh

15:18-15:42

Clustering-Based Multi-Characteristic Comparative Analysis of COVID-19 Epidemiology in Europe

Alexander Kirpich

15:42-16:06

Early detection of emerging viral variants with altered phenotypes using viral epistatic networks

Pavel Skums

16:06-16:30

On Multi-Phase Metagenomics Reads Binning

Francesco Tomasella, Cinzia Pizzi

16:30-17:00 Coffee Break

17:00-18:30

VISTA: An integrated framework for structural variant discovery

V. Sarwal, S. Lee, J. Yang, S. Sankararaman, M. Chaisson, E. Eskin, S. Mangul

Genetic Predisposition to Alcoholism Significantly Alters the Functional Connectivity of the Brain

Michael Yu, Steven Wilson, Sina Khanmohammadi

A Model for Elucidating the Single Molecule Synthesis Process through Temporal Information

Hsin-Hao Chen, Chung-Chin Lu

A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater

Justin Su, Viorel Munteanu, Serghei Mangul

Role of walnut-derived urolithins in reducing colonic inflammation in a patient cohort elucidated by an integrated omics

Daniel Rosenberg, Marmar Moussa

Computational tumor progression analysis via seriation based trajectory inference

Marmar Moussa, Sriram Boddeda

Predicting Antibiotic Metabolites with One and Two-Steps in Silico Biotransformations to Support Identification of Unknown Chemicals in Exposome and Metabolome

Kyle Song

Exploring Protein Design Landscapes with Semi-Supervised Adaptive Sampling

Deepanshu Mody

A Simple and Interpretable Deep Learning Model for Diagnosing Pneumonia from Chest X-Ray Images

L. Silva, Marques Hara, Mendes de Paula, Rossi Paschoal, Lopes

Network-Based Bioinformatics Highlights Broad Importance of Human Milk Hyaluronan

Hua Zhong, Kathryn Burge, Hala Chaaban

mRNA stability prediction

Shashank Pathak, Guohui Lin

PHViT4Lung: Parallel Hybrid Vision Transformers Augmented by Transfer Learning to Enhance Lung Cancer

Reza Roofegari Nejad, Pranay Julu, Sahar Hooshmand

Integrating Neural Networks into DNA Sequence-Based Predictions of RSS Functionality and Activity

Justin Harris, Andrew Fagg, Dee Wu, Karla Rodgers

Fast Multi-level Neural Networks to Overcome Bias in Healthcare Applications

Rachel Bennett, Talayeh Razzaghi

Investigating Microbial Community Functions in Chronic Bacterial Infections

Aanuoluwa Adekoya, Carolyn Ibberson

A computational framework for identifying TCell Receptor specificity in single cell resolution

Marmar Moussa

18:30-20:30 Networking Event