This mini-symposium will explore the intersection of optimization and ordinary or fractional differential equations, highlighting recent advances in analytical frameworks, numerical methods, and application-driven models. In particular, fractional operators have emerged as powerful tools in capturing memory, hereditary effects, and multiscale dynamics—making them natural candidates for modeling and solving complex optimization problems in science and engineering.The session will feature talks focusing on:
Variational formulations involving integer or fractional derivatives;
Optimal control of dynamical systems governed by ODEs or FDEs;
Applications to real world problems.
The goal is to foster cross-disciplinary dialogue between researchers in optimization and numerical analysis, and to promote modeling and algorithmic tools for modern optimization tasks.
From fractional variational principles to classical optimization
ABSTRACT. In this talk, we introduce a new framework for variational problems governed by fractional differential equations, where the fractional derivatives depend on an auxiliary function. We establish a systematic variational methodology and derive the necessary optimality conditions for functionals defined through these generalized operators.
Beginning with the classical variational setting, we obtain the associated Euler–Lagrange equation and extend the analysis to more general situations, including isoperimetric and Herglotz type problems.
ABSTRACT. In this talk, we advance fractional optimal control (OC) theory by proving a version of
Pontryagin’s maximum principle and establishing sufficient optimality conditions for an OC problem. The dynamical system constraint in the OC problem under investigation is described by a generalized fractional derivative: the left-sided Caputo distributed-order fractional derivative with an arbitrary kernel. This approach provides a more versatile representation of dynamic processes, accommodating a broader range of memory effects and hereditary properties inherent in diverse physical, biological, and engineering systems.
ABSTRACT. The rapid evolution of smartphone markets, characterized by intense competition, short product life cycles, and strong network effects, demands robust analytical frameworks to support strategic decision-making. This study develops a dynamic innovation diffusion framework combined with optimal control theory to examine marketing and pricing strategies that maximize product adoption and revenue throughout the smartphone lifecycle. The proposed approach captures innovation-driven adoption, social influence effects, and market saturation dynamics typical of high-technology environments. Within this setting, an optimal control problem is formulated where marketing effort, pricing intensity, and promotional timing act as policy instruments shaping the diffusion trajectory.
Numerical simulations calibrated with representative smartphone market parameters illustrate how adaptive strategies can accelerate early adoption, delay market saturation, and enhance long-term profitability. The findings emphasize threshold effects in marketing intensity, the relevance of early promotional investment, and the sensitivity of optimal policies to social interaction strength and market potential.
Modeling and optimal control of SICA epidemic models
ABSTRACT. In this talk, we revisit the SICA (Susceptible–Infected–Chronic–AIDS) compartmental model, commonly used to model the transmission dynamics of HIV/AIDS, exploring its formulation through ordinary, fractional, and stochastic differential equations. After, we study optimal control problems associated with SICA models, applying both direct and indirect numerical methods to evaluate control strategies under diverse epidemic scenarios.
The multiscale dynamics occurring at interfaces and boundaries are of paramount importance in many scientific and industrial applications, such as fluid-structure interactions, free boundary material interfaces, and biological growth. With the advent of innovative numerical approaches based on evolving surfaces and geometric partial differential equations, the complex structures of a wide spectrum of phenomena can be preserved at the discrete level, and the numerical schemes can be implemented efficiently and accurately. This mini-symposium aims to discuss recent advances in the design, analysis and applications of numerical methods to moving interfacial problems, and geometric partial differential equations, among others.
High-order parametric local discontinuous Galerkin methods for anisotropic 1 curve-shortening flows
ABSTRACT. We propose a family of high-order local discontinuous Galerkin (LDG) methods, built on a parametric representation and coupled with a semi-implicit backward Euler time discretization, for isotropic and anisotropic curve-shortening flows. The spatial LDG formulation introduces auxiliary variables and carefully designed numerical fluxes which inherit the underlying variational structure. We prove the unconditional energy dissipation for the semi-discrete scheme, and establish the well-posedness for the fully discrete scheme under mild assumptions. For Pk
approximations, the LDG method achieves high-order spatial convergence; extensive numerical experiments confirm optimal (k + 1)-order accuracy when the surface energy is isotropic or weakly anisotropic. Compared to classical parametric finite element methods (PFEM), the proposed LDG schemes do not need to rely on good mesh distributions or auxiliary symmetrized surface energy matrices for strongly anisotropic surface energy cases, and remain numerically stable on severely degraded meshes that typically cause PFEMs failure. This intrinsic stability enables effective capture of complex geometric evolution and sharp corner singularities produced by strong anisotropy. The approach thus provides a flexible and reliable framework for the numerical simulation of a broader class of geometric flows.
TPDv algorithms for nonlinear PDEs with application to JKO schemes and interface dynamics
ABSTRACT. In physics and mathematics, a large class of PDE systems can be formulated as minimizing energy functionals subject to certain constraints. Lagrange multipliers are widely used for solving these problems, which however leads to minmax optimization problems, i.e., saddle point systems. The development of fast solvers for saddle point systems, especially the nonlinear ones, is particularly difficult in the sense that (i) one has to consider the preconditioning in two directions and (ii) the preconditioners have to evolve in iteration due to the nonlinearity.
In this work, we introduce an efficient transformed primal-dual (TPD) algorithm to solve the aforementioned nonlinear saddle point problems. One typical application of the present work is accelerate the JKO scheme in modeling free interface dynamics.
A Second-order Structure-preserving Parametric FEM for Surface Evolution
ABSTRACT. We propose a second-order-in-time, structure-preserving, and mesh-robust parametric finite element method for surface diffusion and volume-preserving mean curvature flow. The original evolution equations are first reformulated into new systems in which the tangential motion is governed by a harmonic map heat flow. This heat flow maps a fixed reference surface onto the evolving surface and induces tangential motion that reduces the associated harmonic energy. Consequently, in the discrete setting, the mesh quality can be maintained at a level comparable to that of the reference surface unless singularities occur. The volume-preserving property is theoretically guaranteed through a careful design of the scheme, while energy dissipation is enforced via a Lagrange multiplier. Several numerical experiments are presented to demonstrate the second-order temporal convergence and the effectiveness of the proposed method in maintaining mesh quality.
Stable fully discrete parametric finite element methods for Willmore flow with applications
ABSTRACT. Numerical approximation of geometric evolution equations that involve the first variation of the Willmore energy is particularly challenging due to the fact that highly nonlinear and fourth order terms appear. In this talk, I will introduce a new parametric fintie element method for Willmore flow of hypersurfaces in a unified framework. The method is linear and employs a splitting of the normal and tangential velocity of the flow. The normal velocity is approximated via an evolution equation for the curvature, and follows the arbitrary Lagrangian-Eulerian approach. This enables an unconditional energy stability with respect to the discrete energy. We also incorporate the `BGN’tangential velocity through a curvature identity. This helps to preserve the mesh quality. We show various numerical examples to demonstrate the favorite properties of the method.
Uncertainty quantification (UQ) in complex dynamical systems poses fundamental challenges in scientific computing, especially for high-dimensional, nonlinear ODE, PDE, and SDE/SPDE models. Recent advances in generative AI -- such as description models and score-based samplers -- offer new perspectives on approximating high-dimensional probability measures, constructing efficient sampling and filtering algorithms, and integrating noisy or partial observations with dynamical models. This mini-symposium will bring together researchers working at the interface of differential equations, numerical analysis, stochastic modeling, and generative AI. Contributions will include mathematically grounded developments of generative model-based UQ methods, training-free and structure-preserving description approaches, convergence and stability analyses, and applications to large-scale dynamical systems in science and engineering.
A Priori and a Posteriori Error Estimate for Pressure Robust Schemes for Incompressible Flow
ABSTRACT. The incompressible fluid model is widely used in various fields in engineering and science and their numerical solutions are of prominent importance in understanding complex, natural, engineered, and societal systems. There has been considerable interest in mathematical modeling and algorithm development. One of the critical challenges is the development of the pressure robust scheme and achieve the desired mass conservation with low cost. Our effort aims at designing the low-cost divergence preserving finite element method and in turn, achieve viscosity independent velocity error estimates. Translating this result to the incompressible fluid equations, our algorithm is robust with varying viscosity permeability values and large pressure gradients. In this talk, we shall present our algorithm development, and then demonstrate the stability and convergence analysis theoretically and numerically. The profiles of benchmark tests indicate that our algorithm outperforms other non-divergence preserving numerical schemes.
DeepSPoC: a deep learning based sequential propagation of chaos
ABSTRACT. Classical Propagation of chaos-based particle method (PoC) was developed for solving mean-field stochastic differential equations and their associated nonlinear Fokker-Planck equations. Recently, a new particle method known as the sequential propagation of chaos (SPoC) whose particle systems replace the fully interaction in PoC by sequential interaction. However, PoC and SPoC are not feasible for high dimensional problems due to their computational complexity and heavy memory requirement. In this work, we present DeepSPoC, that combines the interacting particle system of SPoC with the deep learning approach, yarding an efficient approach for tackling high dimensional problems. In DeepSPoC, a newly developed normalizing flow model called KRnet is used to approximate the empirical measure of particles. Compared with PoC and SPoC, DeepSPoC substantially reduces the memory required, computes particle interactions more efficiently, and is much more effective at solving high-dimensional problems. We apply DeepSPoC to a wide range of different types of mean-field equations and verify its effectiveness and advantages.
A Diffusion Model-Based Approach for Uncertainty Reduction in Learning Data-Driven Dynamical Systems
ABSTRACT. We present a novel framework for uncertainty reduction in machine learning (ML) models for data-driven dynamical system prediction. While ML provides an efficient surrogate for simulating dynamical systems, predictive uncertainty persists—even with abundant data—and can accumulate over time, leading to degraded long-term performance. To address this challenge, we incorporate data assimilation techniques into the training pipeline to iteratively refine model predictions by integrating observational information.
Specifically, we employ the Ensemble Score Filter (EnSF), a generative AI–based, training-free diffusion-model approach, to solve data assimilation problems in high-dimensional, nonlinear systems. This results in a hybrid data assimilation–training framework that couples ML models with EnSF to enhance long-term predictive accuracy and stability. We demonstrate that EnSF-enhanced ML effectively reduces predictive uncertainty in the Lorenz–96 system and in simulations of the Korteweg–De Vries (KdV) equation.
ABSTRACT. The talk will present recent developments in generative modeling, compressive sensing, statistical machine learning, and data assimilation tools to design data reduction methods uniquely capable for the emerging infrastructure being built for interconnected science and analysis of computational, experimental, and observational data. A critical feature of scientific data, in contrast to other types of data, is that (possibly unknown) physical principles lie at the foundation. Hence the reduction methods in this proposal seek to optimize for known physical properties as well as discover the underlying characteristics of unknown physical properties. Importantly, while scientific research is constantly growing in size and scale, there are efforts to evolve into a new paradigm that considers more connected, collaborative, autonomous, and real-time environments -- creating exciting opportunities and challenges for data reduction which this presentation aims to address.
Advances in many fields like image recognition, natural language processing and also scientific computing, have in recent years been driven by the application of neural networks. Neural networks are a class of non-linear functions that can in theory approximate any map to arbitrary accuracy. In practice they are almost always used to produce a fit to a data set, the so-called training data. Classical numerics on the other hand is concerned with modeling differential equations on a computer to replicate analytic/physical behavior as well as possible. Approximators used for this task are in many cases however very simple and are often only linear. In this minisymposium we want to go beyong the data-driven application of neural networks for scientific computing, and look at how existing techniques from classical numerics can be improved upon by incorporating more powerful nonlinear approximators, like neural networks.
Reversible numerical integrators for memory efficient deep learning
ABSTRACT. We show how time-adaptive, high-order, reversible numerical integrators can be used in the neuralODE framework to design efficient, adversarially robust neural network architectures. We discuss how reversibility of the integrator helps to bypass memory bottlenecks during training of the neural network. Moreover, time-adaptivity and high-order numerical integration allow to incorporate training data appearing at irregular intervals and efficient, highly accurate evaluations of the network.
Using Symplectic Realizations for the Simulation and Learning of Hamiltonian Dynamical Systems
ABSTRACT. Developing geometric integrators for the simulation of dynamical systems is a central theme in structure-preserving numerical analysis. In this talk, we present recent advances based on symplectic groupoids and Poisson geometry that provide a geometric framework for the construction of integrators for Hamiltonian dynamics. We show how these structures naturally encode fundamental properties such as symplecticity, conservation laws, and invariants associated with Poisson systems, leading to simulation methods that remain faithful to the underlying geometry. This perspective connects naturally with ideas from geometry-aware learning.
A filtering approach to quantifying discretisation errors in solving evolution equations
ABSTRACT. Discretisation errors are unavoidable when numerically solving evolution equations, regardless of whether one employs conventional discretisation-based solvers or neural network–based approaches. Excessively high accuracy can lead to unnecessary computational cost, whereas insufficient accuracy may introduce systematic bias, for example, in inverse problems or data-driven modelling. Therefore, quantifying such errors beyond the scope of asymptotic error analysis has recently become an important topic. In particular, this task is nontrivial in the context of nonlinear dynamics.
In this talk, we present a new approach to this motivation. The central idea is to model the discretisation errors as random variables and to estimate their statistical properties using available computational and observational data. More specifically, we formulate a state-space model that includes additional random variables representing discretization errors, and estimate these variables using filtering techniques. The proposed framework incorporates prior information from both theoretical numerical analysis, such as the order of accuracy or structure preservation, and empirical observations. We present numerical experiments demonstrating that the method can capture the behaviour of discretisation errors in a quantitative manner.
Neural non-canonical Hamiltonian dynamics for long-time simulations
ABSTRACT. In this we work focuses on learning non-canonical Hamiltonian dynamics from data, where long-term predictions require the preservation of structure both in the learned model and in numerical schemes. Previous research focused on either facet, respectively with a potential-based architecture and with degenerate variational integrators, but new issues arise when combining both. In experiments, the learnt model is sometimes numerically unstable due to the gauge dependency of the scheme, rendering long-time simulations impossible. Here, first, we identify this problem and secondly we propose two different training strategies to address it, either by directly learning the vector field or by learning a time-discrete dynamics through the scheme. Several numerical test cases assess the ability of the methods to learn complex physical dynamics, like the guiding center from gyrokinetic plasma physics.
Stochastic differential equations (SDEs) are an essential part of modern scientific computing, with various applications in Bayesian statistics, machine learning, optimal control, or molecular dynamics, to mention just a few examples. They provide a rich source of theoretical and algorithmic tools that can be used to analyse and improve the efficiency of Markov chain Monte Carlo, stochastic gradient descent, or the like. For typical sampling or learning tasks, the state or parameter space can have a complicated geometry or, as is common, the underlying probability measure is supported only on a low-dimensional submanifold. This is where SDEs with (algebraic) constraints come into play. This minisymposium will cover a number of different interconnected keywords arising in connection with constrained SDEs, such as
• diffusion models and sampling of conditional probabilities
• Markov chain Monte Carlo on submanifolds
• interpolation and fitting on Riemannian manifolds
• manifold hypothesis in statistical learning
• stochastic optimisation of functions defined on manifolds.
ABSTRACT. Sampling probability distributions on submanifolds is a relevant task in various problems in statistics. Specialized Markov Chain Monte Carlo (MCMC) methods were originally designed to address similar challenges in statistical physics and were recently adopted in various statistical contexts, as hypotheses testing, ABC, Generalized fiducial inference. However, these MCMC methods have proven to be adaptable to a variety of sampling problems in Bayesian statistics which are not naturally defined on submanifolds and offer promising avenues for efficiently sampling probability distributions.
Realisation of constraints in underdamped Langevin dynamics
ABSTRACT. In this talk I will discuss different constraint mechanisms in the context of underdamped Langevin dynamics. Specifically, I will speak about the realisation of constraints by either strong confinement forces or tuning physical parameters such as friction or mass, which fall in the class of so-called soft constraint techniques and include a parameter $\eps$ giving weight to the constraint mechanism.
I will present quantitative pathwise convergence results for the constrained variables as well as for the unconstrained variables to a limit dynamics. This includes a discussion about (a) the requirement that the initial conditions satisfy the constraint, (b) requirements regarding the potential, (c) further implications of the results, and (d) associated invariant distributions.
The Witten Laplacian on Riemannian Manifolds: Computational Methods for Saddle-Point Problems
ABSTRACT. Locating index-1 saddle points of an energy landscape is a central computational problem in nonconvex optimisation, with applications ranging from rare-event sampling to transition-state search in quantum chemistry. Existing methods — nudged elastic band, dimer, eigenvector-following — are inherently local: they refine a saddle near a given initialisation. The Witten Laplacian offers a complementary, global picture: its low-lying spectrum encodes the index-1 saddles of the entire landscape simultaneously, with eigenforms that concentrate on the saddles in the semiclassical limit. To expose the information encoded in the Witten Laplacian to computational methods we discuss a probabilistic interpretation via an augmented Langevin SDE and discuss a Monte-Carlo algorithm that concentrates on index-1 saddles, with $O(d)$ cost per particle, and embarrassingly parallel execution.
Numerical methods for constraint Langevin dynamics with complex heat bath models
ABSTRACT. In this talk, I will discuss the problem of constructing numerical solutions for kinetic Langevin dynamics with holonomic constraints and complex heat bath models, e.g., tensor-valued friction and diffusion coefficients. I will discuss particular challenges posed by such settings and introduce a class of numerical integration schemes that address these.
Today’s cutting-edge science and engineering simulations require the ability to highly resolve physical and temporal domains and to compute solutions to complex, multiphysics systems. Use of high performance computing platforms has been critical to progress in several application areas, including fusion and earth sciences, quantum physics, materials science, and health sciences. One significant insertion path for numerical mathematics innovations has been through their implementation in high performance software packages. In order to allow scientists and engineers to focus on their scientific challenges, numerical simulation frameworks commonly include interfaces to numerical packages. These interfaces provide access to libraries facilitating the inclusion of new algorithms and methods and achievement of high performance on today’s largest and most complex computing platforms. This minisymposium will include presentations on 4 numerical software libraries that facilitate the solution of complex scientific problems on today’s high performance computing platforms. The packages include the SUNDIALS library of time integrators and nonlinear solvers, the Firedrake system for solving partial differential equations with finite elements, the deal.II finite element library, and the MFEM library for finite element methods. Presentations will include overviews of the packages and their capabilities, as well as examples of their use on high performance systems.
New Features and Applications in the SUNDIALS Library
ABSTRACT. The SUNDIALS library of time integrators and nonlinear solvers has long provided efficient adaptive multistep and multistage time integration methods. New capabilities in SUNDIALS have been added to support multiscale and multiphysics applications, allowing them the flexibility to switch between single rate and various approaches for handling multiple rate problems. These approaches include several operator splitting as well as multirate methods. This talk will start with a brief overview of the SUNDIALS library and then describe some of the newest features. Results from combustion, climate, and quantum dynamics applications will be presented along with some reflections on working as a mathematician at a DOE national laboratory.
Prepared by LLNL under Contract DE-AC52-07NA27344. LLNL-ABS-2007999.
Firedrake: a differentiable programming framework for finite element simulation
ABSTRACT. Differentiable programming is the underpinning technology for the AI revolution. It allows neural networks to be programmed in very high level user code while still achieving very high performance for both the evaluation of the network and, crucially, its derivatives. The Firedrake project applies exactly the same concepts to the simulation of physical phenomena modelled with partial differential equations (PDEs). By exploiting the high level mathematical abstraction offered by the finite element method, users are able to write mathematical operators for the problem they wish to solve in Python. The high performance parallel implementations of these operators are then automatically generated, and composed with the PETSc solver framework to solve the resulting PDE. However, because the symbolic differential operators are available as code, it is possible to reason symbolically about them before the numerical evaluation. In particular, the operators can be differentiated with respect to their inputs, and the resulting derivative operators composed in forward or reverse order. This creates a differentiable programming paradigm congruent with (and compatible with) machine learning frameworks such as Pytorch and JAX.
In this presentation, I will present Firedrake in the context of differentiable programming, and show how this enables productivity, capability and performance to be combined in a unique way. I will also touch on the mechanism that enables Firedrake to be coupled with Pytorch and JAX.
The deal.II finite element library: What it is and how it delivers it
ABSTRACT. The deal.II library (https://www.dealii.org) provides a comprehensive set of data structures and algorithms in which users build finite element applications that solve partial differential equations. In this talk, I will provide an overview of the library's features, as well as of the development processes that over the past 28 years have led to a software with nearly 2 million lines of C++ code and a large user and developer community.
High-performance finite element simulations with MFEM
ABSTRACT. In this talk we present an overview of MFEM (https://mfem.org), a scalable library for high-order finite element discretization of PDEs on general unstructured grids that employs partial assembly and matrix-free algorithms to power a wide variety of HPC applications. Our approach to efficient operator evaluation is based on a decomposed representation of the finite element operator, that factors a bilinear form into a series of sparse and dense components corresponding to the parallelism, mesh topology, basis, geometry, and pointwise physics in the problem. This exposes several layers of parallelism, enables the use of batched dgemss and tensor contractions, and only requires quadrature point values to be assembled for computing the action. The "partial assembly" formulation is a natural fit for modern HPC hardware because it results both in less (nearly optimal) computation and less (optimal) data movement compared to assembling a global sparse matrix, therefore increasing performance and reducing time to solution. In addition to discussing MFEM's capabilities and algorithms, and demonstrate their impact in several large-scale applications from the US Department of Energy.
Molecular Dynamics (MD) simulations provide atomistic-resolution information about equilibrium and dynamical properties of large-scale molecular systems, with numerous applications in biology, chemistry, materials science and engineering. Machine learning (ML) and artificial intelligence (AI) have provided exciting new ideas and tools to model molecular systems, to design simulation engines, or to analyse data from simulations. Prominent examples include AlphaFold2 and its successors, which enabled protein structure prediction at an unprecedented success rate, or machine-learned interatomic potentials (MLIPs), which enable evaluation of molecular energies at quantum-mechanical accuracy. In this minisymposium, we aim to bring together researchers working on novel ML/AI-methods to predict molecular structures and properties, with a particular focus on dynamical quantities. We will hear state-of-the-art results on simulation of molecular systems using MLIPs, about AI-based learning of coarse-grained models, and about the use of generative models to overcome the sampling problem for molecular systems. The symposium is also meant to be a networking opportunity for young researchers, which is why all confirmed speakers are graduate students or junior postdocs.
Consistent Projection of Langevin Dynamics: Preserving Thermodynamics and Kinetics in Coarse-Grained Models
ABSTRACT. Coarse graining (CG) is an important task for efficient modeling and simulation of complex multi-scale systems, such as the conformational dynamics of biomolecules. This work presents a projection-based coarse-graining formalism for general underdamped Langevin dynamics. Following the Zwanzig projection approach, we derive a closed-form expression for the coarse grained dynamics. In addition, we show how the generator Extended Dynamic Mode Decomposition (gEDMD) method, which was developed in the context of Koopman operator methods, can be used to model the CG dynamics and evaluate its kinetic properties, such as transition timescales. Finally, we combine our approach with thermodynamic interpolation (TI), a generative approach to transform samples between thermodynamic conditions, to extend the scope of the approach across thermodynamic states without repeated numerical simulations.
ABSTRACT. Accurate coarse-grained (CG) models depend on reliable estimates of the potential of mean force (PMF), but standard force matching approaches require expensive unbiased sampling from the Boltzmann distribution and often fail to accurately capture transition regions. We show that performing enhanced sampling directly in CG coordinate space, combined with unbiased recomputation of forces, speeds up exploration, improves convergence, and leads to better PMF estimation. Building on this, we introduce Coarse-Grained Boltzmann Generators, which combine flow-based generative models with importance sampling in CG space guided by a learned PMF. Our framework enables scalable and statistically exact sampling of complex molecular systems.
ABSTRACT. Metastable states and the conformational transitions in between them are key to understanding the dynamical behavior and function of large-scale molecular systems. By combining basic dimensionality reduction techniques with a state-of-the-art approximation of the Koopman operator associated with molecular dynamics simulations (MD), we show that these states and transitions can be analyzed very efficiently based on MD simulation data. To construct the Koopman approximation, we employ a kernel-based method and solve the associated matrix equations using random Fourier features, leading to accurate solutions while maintaining low computational effort. On a benchmark set of fast-folding proteins, we demonstrate that key properties such as transition timescales, free energies, secondary structure elements, and hydrogen bonding patterns can be computed with remarkable robustness across hyperparameter regimes.
AI and Molecular Dynamics: a theoretical perspective on why generative models can boost sampling
ABSTRACT. Sampling metastable probability measures remains a central challenge in high-dimensional computational
statistical physics. Classical Monte Carlo and Langevin-based samplers often suffer from exponentially
large mixing times induced by energetic and entropic barriers. A promising strategy is to introduce non-
local proposal moves defined in a reduced space of collective variables (CVs), yet existing constructions
primarily address linear CVs and overdamped dynamics. In this talk, we develop a general mathematical
framework for non-local Monte Carlo proposals associated with nonlinear collective-variable maps in the
setting of underdamped Langevin dynamics. Starting from the geometric structure of the CV mapping,
we define a lifted Markov transition kernel that performs non-local moves in CV space while preserving the
target measure on the full phase space. We derive sufficient conditions for reversibility, establish detailed
balance of the resulting scheme, and analyze how the coupling between momentum, nonlinearity of the
CV map, and the proposal distribution affects acceptance probabilities and effective mixing rates. Our
results provide a principled extension of CV-based acceleration techniques to settings of intermediate
CV dimensionality, where generative models can be used to approximate proposal distributions. Numerical experiments serve only to illustrate the theory: the main emphasis will be on
the structural, measure-theoretic, and algorithmic properties that guarantee correctness and improved
sampling performance.
Modeling high-dimensional and complex systems through partial differential equations has long been of interest in both industry and science. However, even as computational capabilities continue to advance, simulating such models remains highly challenging, particularly in tasks such as uncertainty quantification and inverse problems. Surrogate modeling has emerged as a widely studied research area, offering powerful approaches to reduce computational costs when dealing with very complex systems. In this minisymposium, we aim to bring together recent advances in surrogate modeling and to discuss the challenges the field faces. In particular, we focus on low-rank tensor methods, polynomial methods, scientific machine learning, and kernel-based methods.
Smoothing and low-rank surrogates for non-smooth optimisation under uncertainty
ABSTRACT. We develop an algorithm to solve high-dimensional risk-averse optimization problems governed by differential equations (ODEs and/or PDEs) under uncertainty. As an example, we focus on the so-called Conditional Value at Risk (CVaR), but the approach is equally applicable to other coherent risk measures. To avoid non-smoothness of the objective function underpinning the CVaR, we propose an adaptive strategy to select the width parameter of the smoothed CVaR to balance the smoothing and approximation errors. This enables both Newton's method for asymptotically quadratic convergence in the number of iterations, and higher-order (such as spectral tensor) approximation of the high-dimensional random fields for exponential convergence in the number of degrees of freedom.
Statistical Frameworks for Learning Nonlinear Mappings in Infinite Dimensions
ABSTRACT. In this talk we discuss statistical properties of learning nonlinear mappings in infinite-dimensional spaces. Given a map G_0 between two separable Hilbert spaces X and Y, we study the recovery of G_0 from noisy input-output pairs (x_i,y_i), i=1,...,n, with y_i = G_0(x_i) + eps_i; here the x_i represent randomly drawn design points in X, and the eps_i are assumed to be i.i.d. white-noise processes in Y.
In the first part of this talk, we adopt a frequentist view and provide general convergence results for least-squares-type empirical risk minimizers over compact regression classes, in terms of their approximation properties and metric entropy bounds.
In the second part, we consider the Bayesian viewpoint: choosing a suitable operator-valued prior, we show well-posedness of the posterior G|(x,y) and establish convergence rates for the posterior mean towards the ground truth.
As an application, we show how both results can be used to obtain learning rates for the nonlinear solution operator of the parametric Darcy flow PDE.
Kernel interpolation in high dimensions with anisotropic sparse grids
ABSTRACT. Kernel interpolation, particularly in the context of Gaussian process emulation, is a powerful tool for surrogate modelling, allowing complex input–output maps to be approximated from relatively few function evaluations. However, in high-dimensional settings, these methods rapidly succumb to the curse of dimensionality---where the number of required function evaluations typically grows exponentially with respect to the input dimension. Fortunately, in many practical applications, functions often exhibit anisotropy in their parameters; where the influence of input parameters on the output can vary greatly. Different formulations of such functional anisotropy are routinely exploited in the high-dimensional approximation literature to mitigate dimensional dependence in the error, enabling the practical approximation of very high dimensional functions.
In this talk, we introduce a generalisation of sparse grid methods for kernel interpolation that incorporates anisotropy through the lengthscale parameter of Matérn kernels, inspired by the empirical success of hyperparameter estimation in high-dimensional Gaussian process regression. We present error bounds demonstrating reduced dependence on the input dimension, together with numerical experiments demonstrating accurate interpolation in very high dimensions when sufficient anisotropy is present.
Over the last few decades, fractional calculus has emerged as a powerful mathematical tool for describing complex systems characterized by memory effects, long-range dependencies, and anomalous transport phenomena across various fields. This minisymposium aims to provide researchers with the opportunity to exchange ideas and discuss key issues in the numerical solution of fractional ordinary differential equations and fractional partial differential equations, covering both the theoretical analysis of numerical methods and the strategies to reduce the high computational cost resulting from the non-local nature of the fractional operators. Contributions focusing on the application of numerical methods to specific problems from engineering, physics and other scientific disciplines, are also welcome. As SciCADE is a prestigious international conference for presenting cutting- developments in scientific computing and in the numerical treatment of differential equations, this minisymposium is perfectly aligned with the conference's core themes. It provides a timely platform to address the specific computational challenges posed by fractional models within the broader scientific computing community.
Subdiffusion Models with Evolving Memory Governed by Scarpi-Type Kernels
ABSTRACT. Subdiffusion dynamics with evolving memory arise in systems where the influence of past states varies over time, reflecting changes in internal configurations or external conditions. In this talk, models governed by Scarpi-type kernels, formulated through convolution operators in the Laplace domain, are presented. Since these kernels are generally not available in closed form in the time domain, solutions are computed via numerical inversion of the Laplace transform, while temporal discretization is carried out using convolution quadrature. In the absence of exact solutions, this inversion approach also serves as a highly accurate reference benchmark. The impact of evolving memory on decay rates and transient behavior, as well as convergence to classical fractional dynamics in the limiting case, is investigated.
Numerical issues in variable-order fractional differential equations with piecewise order transitions
ABSTRACT. Fractional differential equations of variable order allow one to capture system dynamics more effectively in situations where the memory effect is not constant.
The numerical treatment of variable-order fractional differential equations is more challenging, particularly when fractional derivatives are defined in the Laplace transform domain rather than directly in the time domain. As this approach is attracting increasing interest, it is important to investigate efficient numerical strategies.
In this talk, we focus on additional difficulties arising from variable-order transitions with low regularity. As a model problem, we consider piecewise transitions in which the order of the fractional derivative is constant at early and late times, but undergoes a linear variation over a finite time interval. Unlike the case of smooth transitions, standard numerical methods for Laplace transform inversion become unreliable in this setting, and more sophisticated approaches are required.
We discuss the origin of these difficulties and outline suitable numerical methods to address them.
Numerical approximation for a stochastic Caputo fractional differential equation with multiplicative noise
ABSTRACT. We investigate a numerical method for approximating stochastic Caputo fractional differential equations driven by a multiplicative noise. The nonlinear functions $f$ and $g$ are assumed to satisfy the global Lipschitz conditions as well as the linear growth conditions. The noise is approximated by a piecewise constant function, yielding a regularized stochastic fractional differential equation. We prove that the error between the exact solution and the solution of the regularized equation converges in the $L^2((0, T) \times \Omega)$ norm with an order of $O(\Delta t^{\alpha - 1/2})$, where $\alpha \in ( 1/2, 1]$ is the order of the Caputo fractional derivative, and $\Delta t$ is the time step size. Numerical experiments are provided to confirm that the simulation results are consistent with the theoretical convergence order.
Patterns and bifurcations in space-fractional reaction-diffusion models
ABSTRACT. In this talk the focus lies on two space-fractional reaction-diffusion equations.
The first model is the Gray-Scott system from chemistry. This system of reaction-diffusion PDEs allows a diversity of different types of patterns: splitting pulses, periodic solutions, traveling waves, and many more. The space-fractional version changes the behaviour of the patterns significantly. An adaptive moving mesh method, based on a non-uniform L2-discretization is applied to deal with the localized moving patterns.
The second model is a stationary Gelfand-Bratu model (with fractional Laplacian) of a completely different character. This model gives rise to an S-shaped bifurcation diagram, depending on the model parameter lambda and the fractional order alfa. Here, the numerical method is based on fractional powers of a finite-difference matrix in the non-linear solver of the discretized system.
Numerical experiments illustrate the theoretical observations for both models.
Nonlinear transport equations arise in several applications and their numerical approximation requires advanced numerical methods, in particular in plasma physics. During this mini-symposium, we will have 4 talks dedicated to recent contributions on this keyword.
Energy Conserving Semi-Lagrangian Scheme for the Vlasov–Maxwell System
ABSTRACT. Plasmas inherently exhibit multiscale dynamics, and the Vlasov–Maxwell system provides a fundamental fully kinetic description of such processes. Most existing kinetic methods rely on explicit schemes, which are easy to implement but require time steps small enough to resolve the plasma period and may suffer from numerical heating in long-time simulations. Implicit schemes offer improved stability but require the solution of costly nonlinear systems. Semi-implicit methods therefore provide an appealing compromise between efficiency and stability. In particular, ECsim introduced an energy-conserving semi-implicit particle-in-cell framework. However, the design of efficient, unconditionally stable, grid-based kinetic schemes for the Vlasov–Maxwell system with exact energy conservation remains a major challenge. In this talk, I will present an inherently noise-free, energy-conserving semi-Lagrangian (ECSL) scheme that retains the simplicity and efficiency of explicit methods while offering the stability advantages of implicit schemes. Numerical results demonstrate its accuracy, efficiency, and conservation properties, making ECSL a promising approach for multiscale plasma simulations.
ABSTRACT. We develop a new implicit geometric Particle-in-Cell method for the Vlasov–Maxwell system. The method combines Galerkin Difference spatial discretization with a semi-implicit discrete gradient time integrator based on Poisson Splitting proposed by Kormann & Sonnendrücker (J. Comput. Phys, vol. 425, pages 109890, 2021). The Galerkin Difference framework provides compact, high-order Lagrange bases that achieve higher accuracy without increasing the number of interior degrees of freedom. Geometric quantities on the grid, point values, edge integrals, face integrals, and volume integrals, are used as degrees of freedom. Duality is achieved by the use of one grid and mass matrices. The resulting implicit geometric particle algorithm is implemented on uniform Cartesian meshes in GEMPICX code and validated through multi-dimensional benchmark problems, including the Landau damping, the Weibel and two-stream instabilities.
Structure-preserving solutions of the relativistic moment equations
ABSTRACT. Fluid models provide collective fluid-like description of plasma and are of interest when micro-scale kinetic effects can be neglected. Relativistic effects are important both in laser-plasma interaction and certain astrophysical environments. In this talk, we consider a relativistic cold fluid model and derive a finite-element discretization that conserves mass, energy and divergence constraints on the semi-discrete level. FFor time discretization, we derive an implicit energy-conserving average-vector field method or apply an explicit strong-stability preserving Runge-Kutta scheme. We also consider a coupling of the fluid model to relativistic particles. We perform a numerical study of the scheme which shows convergence and conservation properties of the proposed methods and apply the new scheme to a plasma wake field simulation.
Neural semi-Lagrangian method for high-dimensional advection-diffusion problems
ABSTRACT. This work is devoted to the numerical approximation of high-dimensional advection-diffusion equations. It is well-known that classical methods, such as the finite volume method, suffer from the curse of dimensionality, and that their time step is constrained by a stability condition. The semi-Lagrangian method is known to overcome the stability issue, while recent time-discrete neural network-based approaches overcome the curse of dimensionality. In this work, we propose a novel neural semi-Lagrangian method that combines these last two approaches. It relies on projecting the initial condition onto a finite-dimensional neural space, and then solving an optimisation problem, involving the backwards characteristic equation, at each time step. It is particularly well-suited for implementation on GPUs, as it is fully parallelisable and does not require a mesh. We provide rough error estimates, and present several high-dimensional numerical experiments to assess the performance of our approach, and compare it to other neural methods.
Implicit time stepping methods play a central role in the numerical solution of time dependent partial differential equations, particularly in stiff, multiscale, and highly nonlinear regimes. In many applications ranging from fluid dynamics and geophysical flows to plasma physics and materials science, explicit methods are severely constrained by stability restrictions. Fully implicit schemes offer the potential for robust simulations with large time steps. For large scale PDE models solved on parallel computers, the industry standard is semi-implicit methods, with the implicit part being chosen for efficient factorisation and re-use from one timestep to the next. However, recent advances in automated code generation as well as mathematics underpinning preconditioners are allowing us to consider fully implicit methods as a serious possibility for large scale PDE solution. This includes Galerkin-in-time methods and high order implicit collocation RK methods, for example. This minisymposium will bring together recent advances in solution techniques for implicit time integration for PDEs, including their combination with structure-preserving spatial discretizations. In particular, many exactly conservative or energy-stable schemes naturally lead to nonlinear systems that must be solved iteratively at each time step, making efficient and scalable implicit solvers an essential component of the overall numerical method. The minisymposium will highlight developments in algorithm design, analysis, and implementation of implicit time-stepping methods, including nonlinear solvers, preconditioning strategies, and interaction with modern spatial discretisations. We invite contributions addressing theoretical aspects, such as stability and convergence, as well as large-scale computational studies and applications, advancing the state of the art in implicit time integration and strengthen its role as a powerful tool for challenging PDE problems.
Iterative Solvers for Implicit Discretisations of the Boussinesq System via Patch-Wise Preconditioning
ABSTRACT. Implicit time-stepping methods for atmospheric and oceanic fluid dynamics lead to large, ill-conditioned linear systems that must be solved efficiently at each timestep. A particular challenge arises in domains with small aspect ratios where standard iterative solvers and preconditioners based on point smoothers degrade. In this talk, we present a robust preconditioning strategy for the fully nonlinear incompressible Boussinesq equations in a two-dimensional vertical slice, designed to address this challenge within a multigrid framework.
The velocity-buoyancy-pressure block arising from an implicit discretisation is preconditioned using a shifted auxiliary operator, which decouples the pressure from the momentum equation. This system is then solved using a multigrid method with vertex-patch line smoothers oriented along the vertical direction, exploiting the anisotropic structure of the mesh. Linearising the equation around the stage of rest leads to an extension of the Mixed Poisson equation. Focusing on the linearised equation, we present an analysis of the shift parameter selection. Numerical results on the Skamarock-Klemp test case confirm the effectiveness and robustness of the approach, with iteration counts and solve times reported for the solver. The method is implemented within the Firedrake finite element framework using Irksome package.
Stage-segrated preconditioners for Galerkin time intergrators in Irksome
ABSTRACT. Implicit high-order time integrators offer high accuracy over long time steps. High-order Galerkin-in-time discretizations enable preservation of invariants and better stability. However, these methods are typically deemed prohibitively expensive, since they involve the solution of large linear systems that couple together all temporal modes or stages.
In this work, we enabled scalable solvers for Galerkin time integrators in
Irksome, a time stepping library built on top of the Firedrake finite element library. We introduce a special basis for Galerkin-in-time discretizations that enables a block preconditioner that decouples the temporal modes. The temporal finite element degrees of freedom are carefully chosen to obtain an equivalent implicit Runge-Kutta collocation method (with the collocated quadrature rule). The equivalent Runge-Kutta method has a cheaper Jacobian, and admits triangular approximations that enable stage-segregated block preconditioners. We illustrate our approach with numerical examples.
Fully implicit timestepping methods for the rotating shallow water equations
ABSTRACT. Fully implicit timestepping methods have several potential advantages for atmosphere/ocean simulation. First, being unconditionally stable, they degrade more gracefully as the Courant number increases, typically requiring more solver iterations rather than suddenly blowing up. Second, particular choices of implicit timestepping methods can extend energy conservation properties of spatial discretisations to the fully discrete method. Third, these methods avoid issues related to splitting errors that can occur in some situations, and avoid the complexities of splitting methods. Fully implicit timestepping methods have had limited application in geophysical fluid dynamics due to challenges of finding suitable iterative solvers, since the coupled treatment of advection prevents the standard elimination techniques. However, overlapping Additive Schwarz methods provide a robust, scalable iterative approach for solving the monolithic coupled system for all fields and Runge-Kutta stages. In this study, we investigate this approach applied to the rotating shallow water equations, facilitated by the Irksome package, which provides automated code generation for implicit Runge-Kutta methods. We compare various schemes in terms of accuracy and efficiency using an implicit/explicit splitting method, namely the ARK2 scheme of Giraldo et al (2013), as a benchmark. This provides an initial look at whether implicit Runge-Kutta methods can be viable for atmosphere and ocean simulation.
Extended Krylov method for fully implicit Runge-Kutta methods
ABSTRACT. Fully implicit Runge-Kutta methods lead to a block system for the solution at all stages. For constant-coefficient PDEs (d/dt + A)x =b this can be written as a Sylvester equation AX + XS = B where the columns of X are the stage solutions and S depends on the Butcher tableau.
To solve this Sylvester equation we propose using a recent extended Krylov method which constructs rational approximations to the stage solutions by extending a standard Krylov space with additional vectors A^{-k}B. Constructing this extended space requires solving a system the size of only a single stage.
Using an implementation of this method in petsc4py and an interface with the Irksome library for IRK methods, we will present numerical experiments for some canonical constant-coefficient PDEs. We will then demonstrate an extension to nonlinear PDEs by preconditioning the Jacobian of a monolithic Newton method with the Jacobian of a constant-coefficient system which can be solved using the extended Krylov method.
In the field of computational science, a central philosophy is that reliable and efficient numerical methods should preserve the underlying mathematical and physical structures of continuous problems. This principle has been highly successful in the development of Finite Element Exterior Calculus (FEEC), where the preservation of the de Rham complex at the discrete level has led to stable and efficient algorithms for electromagnetism and fluid dynamics.
However, many problems in physics and engineering, such as the Einstein equations in general relativity and the modeling of continua with complex microstructures, involve differential structures that go beyond the standard exterior calculus of differential forms. This minisymposium aims to explore the emerging framework of Finite Element Tensor Calculus (FETC). We will focus on the fundamental challenge of discretizing geometric objects and high-order tensor fields.
This session seeks to foster a unified framework for the modeling and computation of complex geometric PDEs, pushing the boundaries of what structure-preserving methods can achieve in scientific computing.
Finite element exterior calculus for spectra and pseudo-spectra of advection-diffusion of differential forms
ABSTRACT. Numerical investigations of dynamo have remained active in fluid mechanics over the past decades, presenting numerous challenges and open problems. Meanwhile, the development of structure-preserving methods and finite element exterior calculus (FEEC) inspires a revisit of numerical dynamo studies and explore existing open questions in computation. In this paper, we present a FEEC approach for dynamo problems. In particular, we investigate structure-preserving finite element schemes for solving the spectra and pseudo-spectra of advection-diffusion operators for differential forms. The scheme and its analysis are based on finite element de~Rham complexes.
ABSTRACT. I will discuss two recent approaches to constructing intrinsic finite element spaces for tensor fields, developed jointly with Evan Gawlik.
One approach, blow-up finite elements, was motivated by a vexing problem when discretizing tangent vector fields on surfaces: With a polyhedral discretization of the surface, the angles at a vertex no longer sum to 360 degrees; as a result, it is not possible to construct a vector field that is continuous within each element, tangent to the surface, and continuous across each edge (in the sense of having no jump in the components tangent to the edge and normal to the edge). Previous approaches either broke tangentiality to the surface or continuity across edges. With blow-up finite elements, we can keep both of these properties by allowing the vector fields to vary rapidly near vertices. I will define these elements for vector fields and tensor fields, discuss some preliminary numerical results, and discuss potential applications to numerical geometry and to intrinsic discretization of the surface Stokes equations for creeping flow.
The second approach was motivated by recent interest in extending finite element exterior calculus from differential forms to double forms, also known as form-valued forms, for applications such as elasticity and numerical geometry. A key property of finite element exterior calculus spaces is their invariance under affine transformations, which, in particular, means that the spaces work the same way on surfaces as they do in the plane. I will discuss our construction of affine-invariant spaces of double forms with polynomial coefficients, the surprising connections to representation theory, and ongoing work on generalizing these results to arbitrary covariant tensor fields.
ABSTRACT. This talk addresses a variational discretization of incompressible Euler flow based on the Koopman representation on half-densities. After choosing finite element spaces for scalar functions and vector fields, infinitesimal advection is represented by skew-symmetric matrices acting on discrete half-densities. The admissible advection operators form a constrained subspace which is not generally closed under commutators, so the resulting dynamics naturally lead to a nonholonomic variational problem. I will describe how a vakonomic formulation treats this constraint intrinsically, in contrast to the more common Lagrange-d’Alembert approach based on projected dynamics, and yields a Lax-type evolution with exact preservation of energy and discrete Casimir invariants.
Stabilising conservative numerical methods with preconditioners
ABSTRACT. We present a new conservative discretisation for the Kadomtsev–Petviashvili equation. We will observe that energy conservation (surprisingly) does not give us numerical stability, and stabilise our method through techniques in preconditioning.
Energy stable auxiliary variable method for Cahn--Hilliard equations
ABSTRACT. The Cahn--Hilliard (CH) equation with rational-like free-energy terms poses a challenge for the design of structure-preserving time discretizations. We propose a quadratic conservation elevation (QCE) method that reformulates the free energy as a quadratic functional in an extended variable system. Moreover, the proposed method preserves the original energy dissipation law at the discrete level. We also derive the associated discrete dispersion relation and analyze its consistency with the continuous one. Numerical results verify the discrete energy behavior, second-order temporal accuracy, and the expected coarsening dynamics, and further capture missing orientations for different anisotropic energy functionals. Additional simulations from several initial conditions illustrate phase separation and anisotropic evolution.
Impulsive Switched Systems with Mixed Dynamics: Lyapunov-Based Analysis of Finite-Time Input-to-State Stability
ABSTRACT. The finite-time input-to-state stability problem is addressed for a class of hybrid systems with coexisting switching and impulsive effects evolving over distinct time mechanisms. The analysis does not impose restrictive assumptions on the individual components: neither the continuous subsystems nor the impulsive effects are required to be inherently stabilizing. A Lyapunov-based framework combined with average dwell-time techniques is developed to characterize the interplay between these two mechanisms. It is shown that when the continuous dynamics admit finite-time input-to-state stability, excessive impulsive activity may destroy stability, which can be avoided by enforcing an upper bound on switching-impulse occurrences. On the other hand, even in the absence of stability in the continuous part, suitably frequent stabilizing impulses can recover the desired FT-ISS property, provided a lower bound on their activation is guaranteed. The proposed results provide a unified perspective on different stability regimes and offer practical criteria for the stability analysis of systems with hybrid dynamics.
ABSTRACT. Particle methods are a powerful numerical method for solving partial differential equations, alongside finite element and finite difference methods. However, because the motion of virtual particles is equivalent to a spatial mesh evolving over time, conventional structure-preserving methods that discretize partial integrals using a fixed mesh cannot be applied. In response to this, we consider discretizing and preserving the variational structure, including the changing spatial mesh, by using a Voronoi mesh with particle positions as generating points and calculating variations for small changes in the Voronoi mesh. We plan to present examples of applications of the Allen-Cahn and Cahn-Hilliard equations.
ABSTRACT. A modern trend in optical design is the use of inverse methods to compute the shape of an optical surface (reflector/lens) that converts a given source light distribution into a desired target distribution. The associated model consists of the principles of geometrical optics, from which we can derive a Jacobian equation for the optical map connecting source and target domain, and the conservation law of luminous flux. Combining these, we can derive (generalized) Monge-Ampère equations for several optical systems. These equations are fully nonlinear, second order elliptic PDEs. In addition, these equations have to be supplemented with the nonstandard transport boundary condition, stating that the boundary of the source domain is mapped to the boundary of the target domain. We have developed several least-squares methods for these equations. In its basic formulation, these are two-stage methods; the first stage is an iterative least-squares method to compute the optical map, and upon convergence, we compute in the second stage the shape of the optical surface, also in a least-squares sense. The computation of the optical map is based on the minimization of several functionals and requires the constrained minimization of the residual of the Jacobian equation, a projection of the optical map on the target boundary and the solution of two Poisson equations, successively. Finally, the optical surface is computed from another Poisson equation. Our methods converge fast and can handle complicated target distributions. We demonstrate the performance for several illustrative examples.
ABSTRACT. The Keller-Segel system models biological aggregation driven by chemotaxis, such as bacterial pattern formation. Simulating its complex 3D dynamics, especially near blow-up singularities where density diverges, is computationally prohibitive with existing methods. To overcome this, we developed the SIPF-PIC framework, a novel hybrid method combining Lagrangian particle tracking with spectral field solvers using optimized interpolation. Crucially, SIPF-PIC reduces the cost per timestep from $\mathcal{O}(PH^3)$ to $\mathcal{O}(P + H^3 \log H)$ while maintaining convergence, where $P$ is the particle count and $H$ the grid resolution per dimension. This enables large-scale simulations capturing elusive blow-up structures like evolving ring singularities, beyond simple point collapse. To the best of our knowledge, this work represents the first numerical approach that can resolve complex 3D blowup dynamics beyond single-point collapse, including the formation of ring-shaped singular structures.
Geometric analysis of an epidemiological model for Olive Quick Decline Syndrome (OQDS)
ABSTRACT. Olive Quick Decline Syndrome (OQDS), caused by the bacterium Xylella fastidiosa, is a vector-borne disease affecting olive groves across Europe, severely impacting Southern Italy. We consider an ODE model for the olive tree canopies, the vector insects, and the weeds. Under the assumption that the insects reproduce significantly faster than the trees and weeds, the model equations are singularly perturbed and can then be analysed via the dynamical systems-based geometric singular perturbation theory. This allows us to reduce the long term dynamics of the model solutions to the dynamics of a globally attracting slow manifold. We extend the model by introducing a Heaviside cut-off to the spread of the disease cross terms and regularise by applying the desingularisation technique, know as "blow-up".
A Thermodynamically Consistent Bulk-Surface PDE Model for Morphogen-Driven Receptor Dynamics and Lipid Raft Patterning
ABSTRACT. We develop a thermodynamically consistent bulk-surface PDE framework for cell-membrane-level dynamics in the canonical Wnt signalling pathway, coupling lipid raft phase separation with receptor trafficking and signalosome formation. To our knowledge, this is the first continuum PDE model to explicitly incorporate lipid raft microdomains into Wnt ligand-receptor dynamics. The model couples a surface Cahn-Hilliard system for lipid membrane composition to a cross-diffusive reaction-diffusion system for membrane-bound receptor states, with bulk diffusion of Wnt morphogen and intracellular receptors linked to the surface via Robin-type boundary conditions. All transport laws are derived from a free energy functional via Onsager's Variational Principle, with Flory-Huggins mixing entropies capturing receptor crowding and volume-filling constraints, raft affinity, and receptor clustering within a unified thermodynamic framework. A fast bulk-diffusion reduction yields a nonlocal surface system, decoupling cell-membrane pattern formation from bulk spatial heterogeneity. The discretisation employs an IMEX scheme based on surface finite elements, implemented in DUNE-FEM with adaptive mesh refinement. The fourth-order structure of the system motivates a Schur complement Newton solver with MPI-aware PETSc linear solvers. We present simulation results from a manufactured solution benchmark and numerical experiments on the sphere exploring raft-driven receptor clustering, signalosome formation, and the role of cell-membrane organisation in regulating spatial signalling patterns.
Multimodal prediction of catheter ablation outcomes in patients with persistent atrial fibrillation
ABSTRACT. The recurrence of atrial fibrillation (AF) following catheter ablation is a common complication in patients with persistent atrial fibrillation (psAF), increasing the risk of stroke and heart failure thereafter. Given the multifactorial nature of post-ablation AF, clinical predictions of successful ablation often suffer from poor accuracy and lack robustness. This paper proposes a multimodal prediction model for post-ablation AF, which extracts complex features from multidimensional data, including electrocardiogram (ECG) images, cellular characteristics, intraoperative and demographic information of patients. Specifically, a dual-module structure is proposed for ECG processing. It consists of an image module that extracts spatial features and a temporal module that captures sequential features, effectively capturing the spatiotemporal dynamics of ECG. A clinical-intraoperative data integration module is developed to combat the complex nature of cellular, demographic, and intraoperative data structures in clinical settings by leveraging sparse and dense feature integration, enabling effective representation and processing. Finally, a feature fusion module is introduced, composed of a dynamic weight mechanism and a multimodal Transformer model, enhancing feature interaction and facilitating effective information synchrony between different modalities. The experimental results demonstrate that the proposed model achieved an accuracy of 0.9079 and an Area Under the Curve (AUC) of 0.8690. These findings highlight significant effectiveness in post-ablation AF prediction, offering a comprehensive prediction framework that supports early intervention for patients with psAF at risk for AF recurrence.
From Fabrication to Efficiency of Organic Photovoltaics: Modelling morphology and device performance
ABSTRACT. Organic solar cells represent a lightweight, flexible, and low-cost alternative to traditional silicon-based cells, yet they currently struggle with stability and conversion efficiency. We present a model describing the formation of acceptor and donor regions during the production of organic solar cells and evaluate how the resulting morphology dictates device efficiency.
The formation of acceptor and donor regions is based on spinodal decomposition, all while a solvent is allowed to evaporate. The derived model couples the donor-acceptor phase separation process with hydrodynamic and evaporative effects.
The resulting electrical performance significantly depends on the device morphology since its layout influences exciton- and charge dynamics. Excitons require the additional energy offset provided by the donor-acceptor interface to separate into charges, while charges require energetic favorable pathways to the respective electrodes. The resulting model couples charge generation by excitons with the hopping transport typical for organic materials, while taking the device morphology into account.
We present a thermodynamically consistent framework describing morphology formation, its subsequent effects on the device performance, and showcase several numerical examples based on finite element simulations.
A Multiscale Hierarchical Segmentation Framework for Cell Fluorescence Microscopy
ABSTRACT. Cell image segmentation is essential for analyzing DNA damage tolerance pathways and cellular responses in health and disease. However, traditional cell segmentation tools, such as MicrobeTracker, are computationally intensive, require substantial manual input, and perform poorly on complex or densely packed cells. In this work, we propose a hierarchical image segmentation framework based on an iterative thresholding approach derived from the Chan–Vese model. The proposed method employs a coarse-to-fine multiscale strategy tailored for cell fluorescence microscopy images. Specifically, an initial coarse segmentation is performed to separate the background, followed by a refined segmentation stage that accurately delineates cell regions and boundaries. Our approach reduces both computational complexity and human intervention. Furthermore, we propose a localized multiscale hierarchical segmentation scheme to address challenges associated with non-uniform illumination.