Days: Monday, October 9th Tuesday, October 10th Wednesday, October 11th Thursday, October 12th
View this program: with abstractssession overviewtalk overview
"Przystan" Restaurant in city center on Odra River Księcia Witolda Str. 2, 50-202 Wrocław
View this program: with abstractssession overviewtalk overview
Teresa Przytycka NIH National Library of Medicine, National Center for Biotechnology Information
Delineating relation between mutagenic signatures, cellular processes, and environment through computational approaches
| 10:50 | Neurogenesis-associated Protein, a Potential Prognostic Biomarker in anti-PD-1 based kidney renal clear cell carcinoma patients therapeutics (abstract) PRESENTER: Zixue Liu |
| 11:10 | Deep Learning Reveals Biological Basis of Racial Disparities in Quadruple-Negative Breast Cancer (abstract) PRESENTER: Bikram Sahoo |
| 11:25 | Exploring Racial Disparities in Triple-Negative Breast Cancer: Insights from Feature Selection Algorithms (abstract) PRESENTER: Bikram Sahoo |
| 11:40 | HetBiSyn: Predicting Anticancer Synergistic Drug Combinations Featuring Bi-perspective Drug Embedding with Heterogeneous Data (abstract)  PRESENTER: Yulong Li |
| 10:50 | Identification and functional annotation of circRNAs in neuroblastoma based on bioinformatics (abstract) |
| 11:10 | Identifying miRNA-disease Associations based on Simple Graph Convolution with DropMessage and Jumping Knowledge (abstract) |
| 11:30 | Phylogenetic Information as Soft Constraints in RNA Secondary Structure Prediction (abstract) PRESENTER: Sarah von Loehneysen |
| 11:50 | The effect of transcriptomic annotations in breast cancer DGE study (abstract) PRESENTER: Magda Mielczarek |
A matchmaking event is a quick and easy way to meet potential cooperation partners. Via b2Match platform one has a possibility to schedule short one to one meetings onsite (during conferece at PORT) or online. 20 minutes run fast, but they are enough to build first connections before the meeting ends and the next talk starts.
We cordially invite you to „Neuroscience meets Bioinformatics for Horizon Europe" matchmaking sessions organized by the Industry Contact Point for Medical Technologies and Health. Sessions will take place on October 10-11, 2023, at PORT during ISBRA conference, as well as online until 18.10.2023. Matchmaking will allow participants to get to know each other and talk. Its goal is to strengthen collaboration by building project consortia and implementing joint interdisciplinary projects. Registration for the event lasts until October 10 via a dedicated form. Note please: when registering, your email is case-sensitive, so use only lowercase letters. If you have any questions, please contact the BPK TMiZ team at our Institute: Monika Ślęzak and Katarzyna Banyś.
Anna Gambin Faculty of Mathematics, Informatics and Mechanics, University of Warsaw
Statistical modeling in proteomics.
| 15:20 | USTAR: Improved Compression of k-mer Sets with Counters Using De Bruijn Graphs (abstract) |
| 15:40 | Approximating Rearrangement Distances with Replicas and Flexible Intergenic Regions (abstract) PRESENTER: Gabriel Siqueira |
| 16:00 | On Computing the Jaro Similarity Between Two Strings (abstract) PRESENTER: Sanguthevar Rajasekaran |
| 16:20 | Using Generating Functions to Prove Additivity of Gene-Neighborhood Based Phylogenetics (abstract) PRESENTER: Sagi Snir |
| 16:40 | Reducing the impact of domain rearrangement on sequence alignment and phylogeny reconstruction (abstract) |
| 17:00 | On Sorting by Flanked Transpositions (abstract) PRESENTER: Lusheng Wang |
| 17:20 | The Ordered Covering Problem in Distance Geometry (abstract) PRESENTER: Michael Souza |
| 15:20 | Predicting Comprehensive Drug-Drug Interactions by Magnetic Signed Graph Neural Network (abstract) |
| 15:40 | BiRNN-DDI:A Drug-drug Interaction Event Type Prediction Model based on Bidirectional Recurrent Neural Network and Graph to Sequence Representation (abstract) PRESENTER: Hui Feng |
| 16:00 | PCPI: Prediction of circRNA and protein interaction using machine learning method (abstract) |
| 16:20 | PDFll: Intrinsic protein disorder and function prediction from the language of life (abstract) PRESENTER: Wanyi Yang |
| 16:40 | Sequence-Based Nanobody-Antigen Binding Prediction (abstract) |
| 17:00 | Deep Learning Architectures For the Prediction of YY1-Mediated Chromatin Loops (abstract) PRESENTER: Ahtisham Fazeel |
| 17:20 | ABCAE: Artificial Bee Colony Algorithm with Adaptive Exploitation for Epistatic Interaction Detection (abstract) |
View this program: with abstractssession overviewtalk overview
Mark Robinson University of Zurich
On the care and feeding of (computational method) benchmarks.
| 10:20 | scGASI: A graph autoencoder-based single-cell integration clustering method (abstract) PRESENTER: Tian-Jing Qiao |
| 10:40 | Integrative analysis of gene expression and alternative polyadenylation from single-cell RNA-seq data (abstract) |
| 11:00 | Inferring Boolean networks from single-cell human embryo datasets (abstract) |
| 11:15 | CHLPCA: Correntropy-Based Hypergraph Regularized Sparse PCA for Single-cell Type Identification (abstract) |
| 11:30 | Simulating tumor evolution from scDNA-seq as an accumulation of both SNVs and CNAs (abstract) |
| 10:20 | Multi-Class Cancer Classification of Whole Slide Images through Transformer and Multiple Instance Learning (abstract) |
| 10:40 | Efficient Sequence Embedding For SARS-CoV-2 Variants Classification (abstract) |
| 11:00 | Unveiling the Robustness of Machine Learning Models in Classifying COVID-19 Spike Sequences (abstract) |
| 11:20 | MPFNet: ECG Arrhythmias Classication Based on Multi-Perspective Feature Fusion (abstract) |
| 11:40 | Hist2Vec: Kernel-Based Embeddings for Biological Sequence Classification (abstract) |
Sagi Snir The Department of Evolutionary and Environmental Biology, University of Haifa
Assembling the Tree of Life in Light of Conflicting Signals
| 15:20 | SGMDD: Subgraph Neural Network-Based Model for Analyzing Functional Connectivity Signatures of Major Depressive Disorder (abstract) PRESENTER: Yan Zhang |
| 15:40 | TCSA: A Text-guided Cross-view Medical Semantic Alignment Framework for Adaptive Multi-view Visual Representation Learning (abstract) PRESENTER: Hongyang Lei |
| 16:00 | A Convolutional Denoising Autoencoder for Protein Scaffold Filling (abstract) PRESENTER: Richard Annan |
| 16:15 | Enhancing t-SNE Performance for Biological Sequencing Data through Kernel Selection (abstract) |
| 16:30 | PDB2Vec: Using 3D Structural Information For Improved Protein Analysis (abstract) |
| 16:45 | DCNN: Dual-Level Collaborative Neural Network for Imbalanced Heart Anomaly Detection (abstract) |
| 15:20 | SaID: Simulation-aware Image Denoising Pre-trained Model for Cryo-EM Micrographs (abstract) PRESENTER: Zhidong Yang |
| 15:40 | Attention-Guided Residual U-Net with SE Connection and ASPP for Watershed-based Cell Segmentation in Microscopy Images (abstract) PRESENTER: Jovial Niyogisubizo |
| 16:00 | Multi-modality MRI Feature Interaction for Pseudoprogression Prediction of Glioblastoma (abstract) |
| 16:20 | NeoMS: Identification of Novel MHC-I Peptides with Tandem Mass Spectrometry (abstract) |
| 16:40 | Radiology Report Generation via Visual Recalibration and Context Gating-aware (abstract) |
View this program: with abstractssession overviewtalk overview
Ana Teresa Freitas Department of Computer Science and Engineering at Técnico Lisbon, University of Lisbon
Turning Data into Genomic Medicine
| 10:20 | CSA-MEM: Enhancing Circular DNA Multiple Alignment through Text Indexing Algorithms (abstract) |
| 10:35 | Genetic Algorithm with Evolutionary Jumps (abstract) PRESENTER: Alex Zelikovsky |
| 10:50 | A Brief Study of Gene Co-Expression Thresholding Algorithms (abstract) |
| 11:05 | Graph-Based Motif Discovery in Mimotope Profiles of Serum Antibody Repertoire (abstract) PRESENTER: Hossein Saghaian |
| 10:20 | ricME: long-read based mobile element variant detection using sequence realignment and identity calculation (abstract) PRESENTER: Huidong Ma |
| 10:40 | Reconciling Inconsistent Molecular Structures from Biochemical Databases (abstract) |
| 11:00 | Clique-based topological characterization of chromatin interaction hubs (abstract) |
| 11:15 | On the Realisability of Chemical Pathways (abstract) |