Program for Wednesday, October 12th: Talk View

PROGRAM FOR WEDNESDAY, OCTOBER 12TH: TALK VIEW

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View: with abstracts session overview

9:00

9:30

10:00

10:30

11:00

11:30

12:00

12:30

13:00

09:00-11:00

Data-driven modeling of cell-cell communication networks

Philipp Burt, Kevin Thurley

09:00-11:00

Modelling of Pharmacokinetics and Pharmacodynamics for first-in-man dose selection of targeted alpha

Andrea Gruber, Andreas Reichel

09:00-11:00

A quantum circuit model for inferring gene regulatory networks with application to single-cell transcriptomic

Cristhian Roman-Vicharra, James Cai

09:00-11:00

Foundations for a theory of IP3 induced Ca2+ signalling - re-inventing a classic.

Martin Falcke, Nicolai V. Friedhoff

09:00-11:00

What are the functions of the short open reading frame-encoded peptides in monocytes? An interactomic

S.A. Choteau, P. Pierre, L. Spinelli, A. Zanzoni, C. Brun

09:00-11:00

Reconstruction of a catalogue of enzyme constrained models of metabolism using GECKO 2.0 and its applications to eukaryote

Iván Domenzain, Jens Nielsen

09:00-11:00

The COmputational MOdeling in BIology NEtwork in 2022: Evolving needs in standardisation and model

Nickerson et.al

09:00-11:00

Spatially-Coordinated Collective Protein Behaviors Enable Robust Circadian Timekeeping

Seokjoo Chae, Dae Wook Kim, Seunggyu Lee, Jae Kyoung Kim

09:00-11:00

A workflow for the creation of regulatory networks integrating miRNAs and lncRNAs associated with exposure to ionizing radiation using open source data and

Freiesleben, Unverricht-Yeboah, Gütebier, Waltemath, Kriehuber, Wolkenhauer

09:00-11:00

Mathematical modelling of the regulatory mechanisms of keratinocyte differentiation for epidermal

Elisa Domínguez-Hüttinger, Reiko J Tanaka

09:00-11:00

Numerical approaches for the rapid analysis of prophylactic efficacy against HIV

Lanxin Zhang, Junyu Wang, Max von Kleist

09:00-11:00

Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction

Le Yuan, Feiran Li, Jens Nielsen, Eduard Kerkhoven

09:00-11:00

Exploring the missing heritability in SPG7 heterozygous carriers with Whole Genome Sequencing

Coutelier, Méreaux, Guillaud-Bataille, Guillot-Noël, Davoine, Brice, Durr

09:00-11:00

Dissecting the Developing Mouse Brain at Spatial Single-Cell Resolution Using PASTA-seq

Strenger, Karaiskos, Licha, Pentimalli, Schott, Splendiani, Macino, Rajewsky

09:00-11:00

Evaluation of methods to compute quasi-potential functions and their use as systems biology models

Balsamy et.al

09:00-11:00

Hypergraph for predicting adverse drug reactions

Hiroshi Mamitsuka

09:00-11:00

Building a Mind for Cancer

Trey Ideker

09:00-11:00

Prediction of enzyme kinetic parameters and substrate scopes using artificial intelligence

Alexander Kroll, Martin Engqvist, David Heckmann, Martin Lercher

09:00-11:00

DeepCellRegMap: An interpretable deep learning framework for mapping genetic effects at cell subtype resolution using large-scale single-cell sequencing

Danai Vagiaki, Manu Saraswat, Tobias Heinen, Oliver Stegle

09:00-11:00

A novel drug response network analysis on supercomputers uncovered gastric cancer drug sensitivity

Heewon Park, Satoru Miyano

09:00-11:00

LipiDetective: a Deep Learning Model for the Detection of Lipid Species in Mass Spectra

Vivian Würf, Nikolai Köhler, Michael Witting, Josch Konstantin Pauling

09:00-11:00

NETISCE: A dynamical systems and control theory approach to cell reprogramming

P. Vera-Licona, L. Marazzi, M. Shah, S. Balakrishnan, A. Patil

09:00-11:00

Fast and scalable machine learning approach for dynamic metabolic engineering

Charlotte Merzbacher, Diego Oyarzún

09:00-11:00

Efficient brute-force model selection by iterative elimination of less useful model subspaces

J. Vanhoefer, A. Körner, D. Doresic, J. Hasenauer, D. Pathirana

09:00-11:00

The insidious trappings of gene set enrichments

January Weiner

09:00-11:00

Inference of differential gene regulatory networks from gene expression data using boosted differential

Gihanna Galindez, Markus List, Jan Baumbach, David B. Blumenthal, Tim Kacprowski

09:00-11:00

Metabolic profile predictions using efficient and interpretable data descriptors generated with relational

Daniel Brunnsåker, Filip Kronström, Ievgeniia Tiukova, Ross King

09:00-11:00

Construction and Decomposition of Cellular Energy Landscapes using Hopfield Neural Networks

Juan P. Bernal-Tamayo, David Gomez-Cabrero, Narsis Kiani, Jesper N. Tegner

09:00-11:00

A training strategy for hybrid models to break the curse of dimensionality: An application in mortality estimation for cohorts of COVID-19

M. E. Samadi, S. Kiefer, S. Fritsch, J. Bickenbach, A. Schuppert

09:00-11:00

Predicting developmental states in zebrafish using transfer learning

Gaurav Jumde

09:00-11:00

New data-driven gene representations using deep autoencoders at multiple omics to identify candidate disease genes and robust

David Martínez-Enguita, Sanjiv Dwivedi, Mika Gustafsson

09:00-11:00

Proteomes in 3D: Structural proteome snapshots as a new functional ‘omics readout

Paola Picotti

09:00-11:00

Cancer cell fate decisions

Lani Wu, Steven Altschuler

09:00-11:00

Disentangling Proliferation Signaling in Breast Cancer Subtypes based on an integrative modeling

Kemmer et.al

09:00-11:00

Combinatorial effects of ligands are predicted by a genome-scale model of signaling based on artificial neural

A. Nilsson, J.M. Peters, N. Meimetis, B. Bryson, D.A. Lauffenburger

09:00-11:00

Implementation of multiplexed single cell proteomics for the investigation of cellular heterogeneity in mammalian cell

Craig Barry, Gert Talbo, Esteban Marcellin

09:00-11:00

DecryptM: decrypting drug actions and protein modification by dose- and time-resolved proteomics

Zecha et.al

09:00-11:00

Computational modeling of DLBCL predicts response to BH3-mimetics

Cloete, Smith, Jackson, Pepper, Pepper, Vogler, Dyer, Mitchell

09:00-11:00

Data-driven mathematical modeling of human skin aging and its application for natural compound

Masatoshi Haga, Tsuyoshi Ishii, Mariko Okada

09:00-11:00

Ionizing radiation triggers differential signaling dynamics of p-p53 and p-ERK1/2 in sensitive and resistant HNSCC cell

Astaburuaga-García, Mutlu, Sell, Branz, Sieber, Klinger, Lauber, Blüthgen

09:00-11:00

Being noisy in a crowd: differential selective pressure on gene expression noise in model gene regulatory

Nataša Puzović, Tanvi Madaan, Julien Y. Dutheil

09:00-11:00

Multi-Omics Visible Drug Activity prediction, interpreting the biological processes underlying drug

L. Ferraro, S. Giovanni, M. Ceccarelli, R. Mall, E. Carosati

09:00-11:00

Molecular regulators of catecholamine response in human pulmonary microvascular endothelial cells

A. Lopez Garcia de Lomana, A.I. Vilhjálmsson, P.I. Johansson, Ó. Rolfsson

09:00-11:00

Analysis of multivariate longitudinal metabolomics data from meal challenges using RM-ASCA+

Erdos, Westerhuis, Adriaens, O'Donovan, Xie, Singh-Povel, Smilde, Arts

09:00-11:00

FISHing for Correlation

Schreiber et.al

09:00-11:00

Personalized medicine for Multiple Sclerosis treatment strategies at the individual and population

Fianne Sips, Alberto Palazzin, Roberta Bursi

09:00-11:00

Comparative analysis of molecular fingerprints in prediction of drug combination effects

Bulat Zagidullin, Ziyan Wang, Yuanfang Guan, Esa Pitkänen, Jing Tang

09:00-11:00

Proteomics profiling revealed a combination of protein biomarkers for predicting disease trajectory of multiple

Åkesson et.al

09:00-11:00

Data-driven modeling of mitochondrial metabolism

Polina Lakrisenko, Andre Wegner, Daniel Weindl, Tobias Ludwig, Nils Krause

11:25-12:00

Preventing & limiting pandemics through vaccination: what have we learned from COVID-19 and MPX?

Leif Erik Sander

12:00-12:45

What we can learn from ancient genomics? Human history, ecosystem change, infectious disease, and disease susceptibility. (EXCEPTION -

Eske Willerslev

12:45-13:00 Closing Ceremony, Poster Awards & Presentation of ICSB 2023!

11:00-11:25 Coffee Break