FENICS'17: THE FENICS 2017 CONFERENCE

This page contains an index consisting of author-provided keywords.

A
a posteriori error estimates	Functional-type two-sided a posteriori error estimates for high-order discretizations
a priori error estimates	Optimality Of Apriori Error Estimates Of Discontinuous Galerkin Method For Elliptic Problems With Nonlinear Newton Boundary Conditions
acoustic metamaterials	Finite Element Modeling of Elastic Wave Dispersion in Pre-strained Negative Stiffness Honeycombs Using FEniCS
acoustics	Finite Element Modeling of Elastic Wave Dispersion in Pre-strained Negative Stiffness Honeycombs Using FEniCS
Adaptation	Analytic Metric-Based Adaptation Using a Continuous Mesh Model
adjoint equation	A Finite Element Approach to Computational Magnetics with Defect Correction
adjoint model	A new algorithmic differentiation tool (not only) for FEniCS
Adjoint state	Automated Solution of Parabolic-Elliptic Systems for Control Applications with Embedded Runge-Kutta Methods
algorithmic differentiation	A new algorithmic differentiation tool (not only) for FEniCS
Allen-Cahn	Topology Optimization under Uncertainties in FEniCS
Anisotropy	Analytic Metric-Based Adaptation Using a Continuous Mesh Model
approximation	Multiscale model reduction using GMsFEM for applied problems in heterogeneous domains
augmented reality	Solving Poisson’s equation on the Microsoft HoloLens
B
bayesian inverse problem	Identification of Mechanical Properties of 3D Myocardial Tissue: An Inverse Modeling and Optimal Experimental Design Problem
beams	Handling of finite rotations in Dolfin
Bloch waves	Finite Element Modeling of Elastic Wave Dispersion in Pre-strained Negative Stiffness Honeycombs Using FEniCS
Block preconditioning	Across the great divide: composable block preconditioning from UFL
blood perfusion	Tracer transport in microvasculature: A case study on coupling 1D-3D problems in FEniCS
bone augmentation operation	From medical images to uncertainty quantification with FEniCS and 3D Slicer
C
Cahn-Hilliard equation	Implementation of Diffuse Interface Models in FEniCS
Cahn-Hilliard-Navier-Stokes	Simulating Moving Contact Line Problems Using the Cahn-Hilliard-Navier-Stokes Equations
cardiac electrophysiology	Accurate Numerical Modeling of Small Collections of Cardiac Cells
Cardiac Mechanics	Sensitivity Analysis of Cardiac Growth Models
Charging of objects in plasmas	Kinetic simulation of plasma-object interaction with FEniCS
cloud	Uncontainable enthusiasm: the pain and joy of Docker on HPC and cloud
code generation	FInAT: Automating Optimal Code Generation for High-Order Finite Element Methods Generating matrix actions with TSFC and Loo.py
codimension 2 subdomains	Tracer transport in microvasculature: A case study on coupling 1D-3D problems in FEniCS
computational biomechanics pipeline	From medical images to uncertainty quantification with FEniCS and 3D Slicer
Computational magnetics	A Finite Element Approach to Computational Magnetics with Defect Correction
conjugate heat transfer	Grid Independence and Manufacturability in Microchannel Heat Sink Topology Optimization
constructive solid geometry	Gmsh 3.0 - Gmsh goes boolean!
containers	Uncontainable enthusiasm: the pain and joy of Docker on HPC and cloud
cut-FEM	A Space-Time Cut Finite Element Method for the Heat Equation in FEniCS
D
defect correction	A Finite Element Approach to Computational Magnetics with Defect Correction
Diagonally Implicit Runge-Kutta (DIRK) methods	Automated Solution of Parabolic-Elliptic Systems for Control Applications with Embedded Runge-Kutta Methods
Dielectrophoresis	MD-FEM Force Field Simulations of Particle Subjected to Dielectrophoresis Interactions
diffuse interface models	Implementation of Diffuse Interface Models in FEniCS
Discontinuous Galerkin	Analytic Metric-Based Adaptation Using a Continuous Mesh Model
discontinuous Galerkin method	Optimality Of Apriori Error Estimates Of Discontinuous Galerkin Method For Elliptic Problems With Nonlinear Newton Boundary Conditions
Docker	Uncontainable enthusiasm: the pain and joy of Docker on HPC and cloud
Dolfin	Handling of finite rotations in Dolfin
dolfin-adjoint	A new algorithmic differentiation tool (not only) for FEniCS Sensitivity Analysis of Cardiac Growth Models
Dynamic domains	Shape Optimization with Multiple Meshes
E
eigenvalue problem	Multi-Level Monte Carlo for Large-scale Vibrations Problems Using FEniCS and podS
elastodynamics	Implementation of Mixed and Hybrid Formulation of the PML Method in Elastodynamics Using FEniCS
electrochemistry	Discontinuous solution of the Laplace equation in a mixed finite element method and level-set setting
Electromechanical particles	MD-FEM Force Field Simulations of Particle Subjected to Dielectrophoresis Interactions
Elliptic problems	Automating Hybridization via Composing Abstractions
F
Fenchel predual problem	Total Variation Image Reconstruction on Smooth Surfaces
FEniCS	A new algorithmic differentiation tool (not only) for FEniCS 3D visualization with FEniCS in Jupyter Notebooks FEniCS: Sustainable Software Development Practices Shape Optimization with Multiple Meshes The impact of microscopic structure on mechanical properties of plant cell walls and tissues Implementation of Mixed and Hybrid Formulation of the PML Method in Elastodynamics Using FEniCS Identification of Mechanical Properties of 3D Myocardial Tissue: An Inverse Modeling and Optimal Experimental Design Problem Sensitivity Analysis of Cardiac Growth Models Multiscale model reduction using GMsFEM for applied problems in heterogeneous domains Towards coupled mixed dimensional finite elements in FEniCS
FEniCS multimesh	A Space-Time Cut Finite Element Method for the Heat Equation in FEniCS
FEniCS Project	From medical images to uncertainty quantification with FEniCS and 3D Slicer
fenics_ii	Tracer transport in microvasculature: A case study on coupling 1D-3D problems in FEniCS
finite element assembly	Loop fusion for finite element assembly in PyOP2
Finite Element Method	Solving Poisson’s equation on the Microsoft HoloLens Kinetic simulation of plasma-object interaction with FEniCS Sensitivity Analysis of Cardiac Growth Models
Finite Element Methods	In memory of Hans Petter Langtangen
Finite elements	Equilibrated Warping: Finite Element Image Correlation with Mechanical Regularization
finite rotations	Handling of finite rotations in Dolfin
fluid mechanics	FEniCS Mechanics: A Package for Continuum Mechanics Simulations
form compiler	Generating matrix actions with TSFC and Loo.py
fractured media	Multiscale model reduction using GMsFEM for applied problems in heterogeneous domains
G
generalized multiscale finite element method	Multiscale model reduction using GMsFEM for applied problems in heterogeneous domains
geometric	Geometric Multigrid in FEniCS
geometric multigrid	Geometric Multigrid in FEniCS
global sensitivity analysis	Uncertainty quantification for soft tissue biomechanics
GMsFEM	Multiscale model reduction using GMsFEM for applied problems in heterogeneous domains
Gmsh	Gmsh 3.0 - Gmsh goes boolean!
H
H(div)	Accurate Numerical Modeling of Small Collections of Cardiac Cells
heterogeneous domain	Multiscale model reduction using GMsFEM for applied problems in heterogeneous domains
high order elements	FInAT: Automating Optimal Code Generation for High-Order Finite Element Methods
high performance computing	Computationally Efficient Numerical Quadratures for the Finite Element Assembly of High-Order non-Lagrange Elements
high-order finite element method	Computationally Efficient Numerical Quadratures for the Finite Element Assembly of High-Order non-Lagrange Elements
higher-order	Functional-type two-sided a posteriori error estimates for high-order discretizations
higher-order derivatives	A new algorithmic differentiation tool (not only) for FEniCS
hippylib	Identification of Mechanical Properties of 3D Myocardial Tissue: An Inverse Modeling and Optimal Experimental Design Problem
HoloLens	Solving Poisson’s equation on the Microsoft HoloLens
HPC	Uncontainable enthusiasm: the pain and joy of Docker on HPC and cloud FENaPack - FEniCS Navier-Stokes preconditioning package
hybrid finite elements	A High-Order Particle-Mesh Operator Splitting Approach for the Incompressible Navier-Stokes Equations
Hybridization	Automating Hybridization via Composing Abstractions
hyperelastic soft tissue models	Uncertainty quantification for soft tissue biomechanics
Hyperelasticity	Equilibrated Warping: Finite Element Image Correlation with Mechanical Regularization
I
Image Correlation	Equilibrated Warping: Finite Element Image Correlation with Mechanical Regularization
image denoising	Total Variation Image Reconstruction on Smooth Surfaces
image inpainting	Total Variation Image Reconstruction on Smooth Surfaces
image reconstruction	Total Variation Image Reconstruction on Smooth Surfaces
incompressible Navier-Stokes equations	A High-Order Particle-Mesh Operator Splitting Approach for the Incompressible Navier-Stokes Equations
interior interface	Accurate Numerical Modeling of Small Collections of Cardiac Cells
interior-point methods	Total Variation Image Reconstruction on Smooth Surfaces
J
Jupyter	3D visualization with FEniCS in Jupyter Notebooks
L
Lagrangian-Eulerian	A High-Order Particle-Mesh Operator Splitting Approach for the Incompressible Navier-Stokes Equations
Laser Annealing	LIAB: a FEniCS based computational tool for laser annealing simulation
level-set	Discontinuous solution of the Laplace equation in a mixed finite element method and level-set setting
Linear elasticity	Mixed-Dimensional Linear Elasticity with Relaxed Symmetry The impact of microscopic structure on mechanical properties of plant cell walls and tissues
loop fusion	Loop fusion for finite element assembly in PyOP2
M
manufacturing constraints	Grid Independence and Manufacturability in Microchannel Heat Sink Topology Optimization
mass conservation	Slope Limiting of Divergence Free Discontinuous Galerkin Vector Fields in the Context of Two-Phase Flows
material model parameter identification	Identification of Mechanical Properties of 3D Myocardial Tissue: An Inverse Modeling and Optimal Experimental Design Problem
MD-FEM	MD-FEM Force Field Simulations of Particle Subjected to Dielectrophoresis Interactions
Mechanical Regularization	Equilibrated Warping: Finite Element Image Correlation with Mechanical Regularization
mesh adaptivity	Topology Optimization under Uncertainties in FEniCS
mesh generation	Gmsh 3.0 - Gmsh goes boolean!
mesh smoothing	From medical images to uncertainty quantification with FEniCS and 3D Slicer
Metric	Analytic Metric-Based Adaptation Using a Continuous Mesh Model
microchannel heat sinks	Grid Independence and Manufacturability in Microchannel Heat Sink Topology Optimization
microvasculature	Tracer transport in microvasculature: A case study on coupling 1D-3D problems in FEniCS
mixed dimensional	Towards coupled mixed dimensional finite elements in FEniCS
mixed finite elements	Accurate Numerical Modeling of Small Collections of Cardiac Cells Mixed-Dimensional Linear Elasticity with Relaxed Symmetry Automating Hybridization via Composing Abstractions Towards coupled mixed dimensional finite elements in FEniCS
mixed formulation	Implementation of Mixed and Hybrid Formulation of the PML Method in Elastodynamics Using FEniCS
Mixed-dimensional	Mixed-Dimensional Linear Elasticity with Relaxed Symmetry
MLMC	podS: A Parallel Multilevel Monte Carlo Framework
model order reduction	iRANitsche: reduced assembly with a Nitsche-based reduced basis method From medical images to uncertainty quantification with FEniCS and 3D Slicer
monte carlo	Topology Optimization under Uncertainties in FEniCS
Monte Carlo methods	Uncertainty quantification for soft tissue biomechanics
Moreau-Yosida regularization	Shape Optimization with Geometric Constraints
Moving contact lines	Simulating Moving Contact Line Problems Using the Cahn-Hilliard-Navier-Stokes Equations
moving discontinuity	Discontinuous solution of the Laplace equation in a mixed finite element method and level-set setting
moving meshes	A Space-Time Cut Finite Element Method for the Heat Equation in FEniCS
MPI	podS: A Parallel Multilevel Monte Carlo Framework
multi-level Monte Carlo	Multi-Level Monte Carlo for Large-scale Vibrations Problems Using FEniCS and podS
multi-mesh	Shape Optimization with Multiple Meshes
multigrid	Geometric Multigrid in FEniCS
multilevel Monte Carlo	podS: A Parallel Multilevel Monte Carlo Framework
MultiMesh	iRANitsche: reduced assembly with a Nitsche-based reduced basis method
Multiphysics	Across the great divide: composable block preconditioning from UFL
Multiple phases and dopants	LIAB: a FEniCS based computational tool for laser annealing simulation
multiscale analysis	The impact of microscopic structure on mechanical properties of plant cell walls and tissues
multiscale model reduction	Multiscale model reduction using GMsFEM for applied problems in heterogeneous domains
myacardium strain energy function	Identification of Mechanical Properties of 3D Myocardial Tissue: An Inverse Modeling and Optimal Experimental Design Problem
N
Navier-Stokes	Slope Limiting of Divergence Free Discontinuous Galerkin Vector Fields in the Context of Two-Phase Flows
Navier-Stokes equations	FENaPack - FEniCS Navier-Stokes preconditioning package
Navier-Stokes(-Fourier) equations	Implementation of Diffuse Interface Models in FEniCS
Newton methods	UFL and the Automatic Derivation of Weak and Strong Shape Derivatives
Nitsche coupling	iRANitsche: reduced assembly with a Nitsche-based reduced basis method
non-Lagrange elements	Computationally Efficient Numerical Quadratures for the Finite Element Assembly of High-Order non-Lagrange Elements
non-local operators	Towards coupled mixed dimensional finite elements in FEniCS
nonlinear boundary conditions	Optimality Of Apriori Error Estimates Of Discontinuous Galerkin Method For Elliptic Problems With Nonlinear Newton Boundary Conditions
Nonlinear elliptic interface	Discontinuous solution of the Laplace equation in a mixed finite element method and level-set setting
nonlinear PDEs	The impact of microscopic structure on mechanical properties of plant cell walls and tissues
nonlinear solid mechanics	Finite Element Modeling of Elastic Wave Dispersion in Pre-strained Negative Stiffness Honeycombs Using FEniCS
O
Open Source Software	In memory of Hans Petter Langtangen
operator-splitting	A High-Order Particle-Mesh Operator Splitting Approach for the Incompressible Navier-Stokes Equations
optimal control	Shape Optimization with Geometric Constraints
optimal experimental design	Identification of Mechanical Properties of 3D Myocardial Tissue: An Inverse Modeling and Optimal Experimental Design Problem
Optimization	Shape Optimization with Multiple Meshes
optimization in function spaces	Shape Optimization with Geometric Constraints
overlapping meshes	A Space-Time Cut Finite Element Method for the Heat Equation in FEniCS
P
parabolic PDEs	A Space-Time Cut Finite Element Method for the Heat Equation in FEniCS
parallel computing	Uncertainty quantification for soft tissue biomechanics
Partial Differential-Algebraic Equations (PDAEs)	Automated Solution of Parabolic-Elliptic Systems for Control Applications with Embedded Runge-Kutta Methods
particle-in-cell	A High-Order Particle-Mesh Operator Splitting Approach for the Incompressible Navier-Stokes Equations
PCD preconditioner	FENaPack - FEniCS Navier-Stokes preconditioning package
Perfectly Matched Layers	Implementation of Mixed and Hybrid Formulation of the PML Method in Elastodynamics Using FEniCS
perforated domain	Multiscale model reduction using GMsFEM for applied problems in heterogeneous domains
performance optimization	Loop fusion for finite element assembly in PyOP2
permanent set	Simulating the Response of Bioprosthetics Heart Valve Tissues to Cyclic Loading in FEniCS
phase field	Topology Optimization under Uncertainties in FEniCS
plant biomechanics	The impact of microscopic structure on mechanical properties of plant cell walls and tissues
Plasma-object interaction	Kinetic simulation of plasma-object interaction with FEniCS
platform-independence	Generating matrix actions with TSFC and Loo.py
podS	podS: A Parallel Multilevel Monte Carlo Framework
Poisson	Functional-type two-sided a posteriori error estimates for high-order discretizations
Poisson’s equation	Solving Poisson’s equation on the Microsoft HoloLens
preconditioning	Trace Constrained Problems in FEniCS
Python	In memory of Hans Petter Langtangen FEniCS Mechanics: A Package for Continuum Mechanics Simulations
R
random vibrations	Multi-Level Monte Carlo for Large-scale Vibrations Problems Using FEniCS and podS
reliability	Functional-type two-sided a posteriori error estimates for high-order discretizations
Rosenbrock-Wanner (ROW) methods	Automated Solution of Parabolic-Elliptic Systems for Control Applications with Embedded Runge-Kutta Methods
S
saddle point systems	Trace Constrained Problems in FEniCS
Scientific Computing	In memory of Hans Petter Langtangen
segmentation	From medical images to uncertainty quantification with FEniCS and 3D Slicer
Self Consistent solutions	LIAB: a FEniCS based computational tool for laser annealing simulation
Sensitivity Analysis	Sensitivity Analysis of Cardiac Growth Models
sensitivity derivatives	Uncertainty quantification for soft tissue biomechanics
Shape optimization	Shape Optimization with Geometric Constraints UFL and the Automatic Derivation of Weak and Strong Shape Derivatives
sharp	Functional-type two-sided a posteriori error estimates for high-order discretizations
Shifter	Uncontainable enthusiasm: the pain and joy of Docker on HPC and cloud
Singularity	Uncontainable enthusiasm: the pain and joy of Docker on HPC and cloud
slope limiter	Slope Limiting of Divergence Free Discontinuous Galerkin Vector Fields in the Context of Two-Phase Flows
soft tissue	Simulating the Response of Bioprosthetics Heart Valve Tissues to Cyclic Loading in FEniCS
Software Development	FEniCS: Sustainable Software Development Practices
Software Productivity	FEniCS: Sustainable Software Development Practices
solid mechanics	FEniCS Mechanics: A Package for Continuum Mechanics Simulations
space-time finite element method	A Space-Time Cut Finite Element Method for the Heat Equation in FEniCS
sum factorisation	FInAT: Automating Optimal Code Generation for High-Order Finite Element Methods
Supercomputing	Simulating Moving Contact Line Problems Using the Cahn-Hilliard-Navier-Stokes Equations
surfaces	Total Variation Image Reconstruction on Smooth Surfaces
T
tensor product elements	FInAT: Automating Optimal Code Generation for High-Order Finite Element Methods
time dependent simulation	Simulating the Response of Bioprosthetics Heart Valve Tissues to Cyclic Loading in FEniCS
topology optimization	Grid Independence and Manufacturability in Microchannel Heat Sink Topology Optimization Topology Optimization under Uncertainties in FEniCS
total bounded variation	Total Variation Image Reconstruction on Smooth Surfaces
trace operator	Trace Constrained Problems in FEniCS
Tree Transformations	UFL and the Automatic Derivation of Weak and Strong Shape Derivatives
two phase flow	Slope Limiting of Divergence Free Discontinuous Galerkin Vector Fields in the Context of Two-Phase Flows
U
UFL	UFL and the Automatic Derivation of Weak and Strong Shape Derivatives Across the great divide: composable block preconditioning from UFL
uncertainty quantification	Multi-Level Monte Carlo for Large-scale Vibrations Problems Using FEniCS and podS podS: A Parallel Multilevel Monte Carlo Framework Topology Optimization under Uncertainties in FEniCS From medical images to uncertainty quantification with FEniCS and 3D Slicer
V
Visualization	3D visualization with FEniCS in Jupyter Notebooks

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