Program for Sunday, October 12th: Talk View

PROGRAM FOR SUNDAY, OCTOBER 12TH: TALK VIEW

View: with abstracts session overview

8:30

9:00

9:30

10:00

10:30

11:00

11:30

12:00

12:30

13:00

13:30

14:00

14:30

15:00

15:30

16:00

16:30

17:00

08:30-09:00 Opening remarks

09:00-10:00

Understanding nano-bio interactions to enable next-generation vaccines and drug delivery systems

Stefan Wilhelm

10:00-10:30 Break

10:30-10:50

Reconstructing the co-evolution of tumors and their microenvironment from multiomic data

Russell Schwartz

10:50-11:10

Efficient Encoding of TCR-pMHC Structure for Improved Structure-Based Binding Prediction

A N M Nafiz Abeer, Xiaoning Qian, Byung-Jun Yoon

11:10-11:30

Post-hoc Explanation for TCR-pMHC Prediction

J. Li, Z. Yin, H. Smith, Z. Ding, S. Landry, R. Mettu

11:30-11:50

An Integrated Computational Antigen Discovery Pipeline with Hierarchical Filtering for Emerging Viral

Roy, Oh, Abeer, Ikegami, Vasilakis, Weaver, Ji, Yoon, Qian

11:50-12:10

scMultiNODE: Integrative and Scalable Framework for Multi-Modal Temporal Single-Cell Data

Jiaqi Zhang, Manav Chakravarthy, Ritambhara Singh

12:10-12:30

GraphMatch: Knowledge Graphs for Allogeneic Stem Cell Matching

Timothy Kunau

12:30-13:30

Cancer Immunology: Mechanisms, Clinical Impact, and Future Directions

Nishimwe Annick

Deep learning for immune network inference from single-cell omics data and modeling tumor-immune system

Chaltienne Gatimakeza

Orthogonal Concept Representation for Traceable Deductive Reasoning: A Neuro-Symbolic Framework for Continual Learning with Applications in

Suyash Mishra

LSTM Prediction of Next-Gene Mutations Using Graph-Derived Orders in Colon Adenocarcinoma

Collin Sumrell, Aleksandr Shishkin, Marmar Moussa

Evaluation of Nuclei Isolation Techniques for Single-Nucleus RNA Sequencing in Tissue and Cell

Marjan Ghanbariabdolmaleki, Marmar Moussa

Enhancing computational immunometabolomic analysis with domain knowledge

Kowshika Sarker, Chengxiang Zhai

GeNeo2: a suite of bioinformatics tools for identifying tumor-specific neoepitopes with enhanced features for personalized cancer

T. Shcheglova, S. Al Seesi, E. Sherafat, J. Force, P. Srivastava, I. Mandoiu

13:30-13:50

Toward Automated and Scalable Hematopoietic Cell Sorting: A Deep Learning Approach

Vahid Khalkhali, Sayed Mehedi Azim, Jianzhong Han, Jian Huang, Iman Dehzangi

13:50-14:10

Exploring Large Language Models for Parameter Estimation: Insights from the Moran Process

Frank Tan, Isaac Huang, Jimmy Huang

14:10-14:30

Predicting Healthcare-Associated Infections in Emergency Department Patients with Solid Tumor

A.B. Tascioglu, F. Bertini, L. Pistore, A. Fabbri, D. Montesi

14:30-14:50

Computational and Experimental Integration Reveals Multi-scale Effects of Peroxidase Mutations

Shaolei Teng

14:50-15:10

CoDER: A new framework for Consistent Drug Efficacy Ranking

M. Rezaei, O. Kahveci, Y. Atay, P.H. Guzzi, P. Veltri, T. Kahveci

15:10-15:30

On the Intractability of Evolutionary Dynamics in Layered Graphs

Xing Tan, Ellen Huang

15:30-16:00 Break

16:00-16:20

Regulatory Drift in Immune Aging: Enhancer Logic and Methylation-Based Predictors Across Species

Suresh Kaulagi

16:20-16:40

Multi-View Graph–Text Alignment for Immunology

Xiao Yue, Bo Liu, Tony Sang, Guangzhi Qu

16:40-17:00

Multi-Agent LLM Frameworks for Multimodal Identification of Alzheimer’s Disease

Song Wang, Tianlong Chen